Jatropha Genome Database

JcCA0275141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0275141.10 - phase: 0 /partial
         (197 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative ...   341   2e-94
AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968)...   185   2e-47
AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative ...   180   4e-46
AT1G21690.2 | Symbols: emb1968 | emb1968 (embryo defective 1968)...   176   6e-45
AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775)...   110   4e-25
AT5G22010.1 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1);...    53   1e-07
AT1G14460.1 | Symbols:  | DNA polymerase-related | chr1:4948962-...    50   1e-06
AT1G24290.1 | Symbols:  | AAA-type ATPase family protein | chr1:...    49   3e-06

>AT1G63160.1 | Symbols:  | replication factor C 40 kDa, putative |
           chr1:23422068-23423771 REVERSE
          Length = 333

 Score =  341 bits (875), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 164/178 (92%), Positives = 173/178 (97%)

Query: 15  YDIPWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 74
           Y+ PWVEKYRP+K+ DIVGNED VSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL
Sbjct: 13  YNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72

Query: 75  LGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKLVILDEADSMTSGAQQA 134
           LG NY+EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEADSMTSGAQQA
Sbjct: 73  LGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQA 132

Query: 135 LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEAEKV 192
           LRRT+EIYSNSTRFALACNTS+KIIEPIQSRCALVRFSRLSDQ+ILGRL+VVV AEKV
Sbjct: 133 LRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKV 190


>AT1G21690.1 | Symbols: emb1968 | emb1968 (embryo defective 1968);
           ATP binding / ATPase/ DNA binding / DNA clamp loader/
           nucleoside-triphosphatase/ nucleotide binding |
           chr1:7615675-7618362 FORWARD
          Length = 339

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 118/181 (65%), Gaps = 8/181 (4%)

Query: 18  PWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 77
           PWVEKYRP ++ D+   E+ V  L    +  + P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 78  N-YREAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKLVILDEADSMTS 129
             Y+  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 130 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEA 189
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  LS++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 190 E 190
           E
Sbjct: 190 E 190


>AT1G77470.1 | Symbols:  | replication factor C 36 kDA, putative |
           chr1:29112194-29114323 REVERSE
          Length = 369

 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 120/176 (68%), Gaps = 1/176 (0%)

Query: 18  PWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 77
           PWVEKYRP  + D+  + D +  +  +  +  +P+L+L GPPGTGKT++ILA+A +L GP
Sbjct: 40  PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP 99

Query: 78  NYREAVLELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGRHKLVILDEADSMTSGAQQALR 136
            YR  +LELNASDDRGIDVVR +I+ FA  +  +L     KLV+LDEAD+MT  AQ ALR
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159

Query: 137 RTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEAEKV 192
           R +E Y+ STRFAL  N  +KII  +QSRC   RF+ L    +  RL  V+EAE++
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERL 215


>AT1G21690.2 | Symbols: emb1968 | emb1968 (embryo defective 1968);
           ATP binding / ATPase/ DNA binding / DNA clamp loader/
           nucleoside-triphosphatase/ nucleotide binding |
           chr1:7615675-7618362 FORWARD
          Length = 327

 Score =  176 bits (447), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 90/181 (49%), Positives = 114/181 (62%), Gaps = 20/181 (11%)

Query: 18  PWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 77
           PWVEKYRP ++ D+   E+              P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57

Query: 78  N-YREAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKLVILDEADSMTS 129
             Y+  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 58  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 117

Query: 130 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEA 189
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  LS++ +  R++ +   
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 177

Query: 190 E 190
           E
Sbjct: 178 E 178


>AT5G27740.1 | Symbols: EMB2775 | EMB2775 (EMBRYO DEFECTIVE 2775);
           DNA binding / nucleoside-triphosphatase/ nucleotide
           binding | chr5:9823831-9826869 FORWARD
          Length = 354

 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 31/203 (15%)

Query: 19  WVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 78
           WV+KYRP  +  ++ +ED   +L+ +  + + P+L+  GP G+GK T I+AL  ++ G +
Sbjct: 3   WVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGAS 62

Query: 79  YREAVLELNA----SDDRGID-------------------------VVRNKIKMFAQKKV 109
             +  +E  A    +  R ID                         +V+  IK  A+ + 
Sbjct: 63  AEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRP 122

Query: 110 TLPPGR--HKLVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCA 167
               G+  +K+++L+E D ++  AQ +LRRTME YS+S R  L CN+SSK+ E I+SRC 
Sbjct: 123 IDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCL 182

Query: 168 LVRFSRLSDQEILGRLMVVVEAE 190
            VR +  S +EI+  L  V + E
Sbjct: 183 NVRINAPSQEEIVKVLEFVAKKE 205


>AT5G22010.1 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1);
           ATP binding / DNA binding / DNA clamp loader/
           nucleoside-triphosphatase/ nucleotide binding |
           chr5:7280632-7287037 REVERSE
          Length = 956

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 42/211 (19%)

Query: 17  IPWVEKYRPNKIADIVGNEDTVSRLQ--------------------VIARDGNMPNLILS 56
           +PW EKYRP    +IVGN+  V++L                      +   G+   ++LS
Sbjct: 340 LPWTEKYRPKVPNEIVGNQSLVTQLHNWLSHWHDQFGGTGSKGKGKKLNDAGSKKAVLLS 399

Query: 57  GPPGTGKTTSILALAHELLGPNYREAVLELNASDDRG---IDVVR-------NKIKMFAQ 106
           G PG GKTTS   L  ++LG       +E+NASD RG    ++ +       N +K    
Sbjct: 400 GTPGIGKTTSA-KLVSQMLGFQ----AVEVNASDSRGKANSNIAKGIGGSNANSVKELVN 454

Query: 107 KK---VTLPPGRH--KLVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTS--SKII 159
            +         +H   ++I+DE D M++G +  +   +     S    +       S+ +
Sbjct: 455 NEAMAANFDRSKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKL 514

Query: 160 EPIQSRCALVRFSRLSDQEILGRLMVVVEAE 190
           + + + C  + + + + Q++  RLM + +AE
Sbjct: 515 KSLVNYCLPLNYRKPTKQQMAKRLMHIAKAE 545


>AT1G14460.1 | Symbols:  | DNA polymerase-related |
           chr1:4948962-4952750 REVERSE
          Length = 1116

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 32/198 (16%)

Query: 21  EKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLIL-SGPPGTGKTTS--ILALA------ 71
           +KY+P    +++G    V  L    + G + ++ L  GP GTGKT++  IL+ A      
Sbjct: 426 QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVV 485

Query: 72  -HELLGPNY-REA----------VLELNASDDRGIDVVRNKIKMFAQKKVTLPPG---RH 116
             E+    Y +E           +LEL+A    G +    K++   +K +TL P    R+
Sbjct: 486 TEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAE----KVRYLLKKLLTLAPQSSQRY 541

Query: 117 KLVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTS--SKIIEPIQSRCALVRFSRL 174
           K+ ++DE   + S    +L + +E  +   +F   C T+    +   IQSRC    F+++
Sbjct: 542 KVFVIDECHLLPSRTWLSLLKFLE--NPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKV 599

Query: 175 SDQEILGRLMVVVEAEKV 192
            D +I+ RL  +   E +
Sbjct: 600 RDGDIVVRLRKIASDENL 617


>AT1G24290.1 | Symbols:  | AAA-type ATPase family protein |
           chr1:8612650-8614227 REVERSE
          Length = 525

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 9/180 (5%)

Query: 18  PWVEKYRPNKIADIVGNEDTVSRLQVIA---RDGNMPNLILSGPPGTGKTTSILALAHEL 74
           P  E+ RP  + D+VG +  +S   ++        +P+++  GPPGTGKT+   +L +  
Sbjct: 102 PLSERMRPRTLDDVVGQDHLLSPSSLLRSAVESNRLPSIVFWGPPGTGKTSIAKSLINSS 161

Query: 75  LGPN-YREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKLVILDEADSMTSGAQQ 133
             P+ YR   L    S   G+  VR+ ++  + K++ L   +  ++ +DE        Q 
Sbjct: 162 KDPSLYRFVSLSAVTS---GVKDVRDAVE--SAKRLNLEGRKRTVLFMDEVHRFNKSQQD 216

Query: 134 ALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEAEKVG 193
                +E  S     A   N S  +I P+ SRC ++  + L    +   L   V+  + G
Sbjct: 217 TFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAVDDSERG 276