Jatropha Genome Database

JcCA0274811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274811.20 + phase: 1 /TE/partial
         (371 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00980.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...    49   4e-06

>AT4G00980.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr4:422732-424580 REVERSE
          Length = 488

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 11/191 (5%)

Query: 75  WDKLEELYASKSGNNQLFYLTKLMNFKYQEGTSVADHLSEMQATIHQLSNMGIKFDDKIL 134
           WD+L+ +Y      ++   + K + F+  E   + + +         + + G+  D+   
Sbjct: 287 WDELKWVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFH 346

Query: 135 GLMVLASLPESWETLKISITNSTPHSGVSWKFVKNAVLNEEMRRKAHN----RSSSQSDI 190
              +++  P SW      +          W  ++     EE+ R        R ++ S  
Sbjct: 347 VSTIISKFPPSWRGFCTRLMEE--EYLPVWMLMERVKAEEELLRNGAKGVTYRPATGSSQ 404

Query: 191 LLADAKRNNHPRGRSQSRSSNTRDKSRGRSNKFANIMCHHCGKKGHIKRYCWKFKSDQEK 250
           +          RG SQS     ++  R   ++   I+C +CG+KGH+ ++CW  KSD E+
Sbjct: 405 MERTPSLGTTHRG-SQSVGWKRKEPER---DERVIIVCDNCGRKGHLAKHCWGSKSD-ER 459

Query: 251 IKGKAKKEESS 261
             GK+ +  SS
Sbjct: 460 ASGKSNRINSS 470