Jatropha Genome Database

JcCA0274511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274511.20 - phase: 0 
         (170 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05070.1 | Symbols:  | unknown protein | chr1:1457172-1458531...    96   7e-21
AT2G32580.1 | Symbols:  | unknown protein | chr2:13827849-138291...    89   1e-18
AT2G24290.1 | Symbols:  | unknown protein | chr2:10338779-103398...    84   6e-17
AT4G30996.1 | Symbols:  | unknown protein | chr4:15101464-151024...    82   1e-16
AT4G04360.1 | Symbols:  | unknown protein | chr4:2133142-2133866...    62   1e-10

>AT1G05070.1 | Symbols:  | unknown protein | chr1:1457172-1458531
           REVERSE
          Length = 184

 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 92/170 (54%), Gaps = 17/170 (10%)

Query: 13  NGALKIVLALVATFLIGYVVRPQL--HSRESSSA--QASCP-CDCDCSEEFALFLP---- 63
             ALKI LAL+   + GY++ P L  H  E+ +A   +SCP C C+CS   A+ +P    
Sbjct: 5   TAALKIGLALLGLSMAGYILGPPLYWHLTEALAAVSASSCPSCPCECSTYSAVTIPKELS 64

Query: 64  ----LDCSNDDPDIHEEMEKDIVALLSEEIALQRRVANDSLEHTRA--LVMDARKASLHY 117
                DC+  DP+++E+ EK+   LL+EE+ L  R A    +H RA   +++A+K +  Y
Sbjct: 65  NASFADCAKHDPEVNEDTEKNYAELLTEELKL--REAESLEKHKRADMGLLEAKKVTSSY 122

Query: 118 QKEAEKCNXXXXXXXXXXXXXXXXXXXXYKLTAEWEKRARELGWEEDSTR 167
           QKEA+KCN                     KLT+ WE+RAR+ GW E ST+
Sbjct: 123 QKEADKCNSGMETCEEAREKAELALAEQKKLTSRWEERARQKGWREGSTK 172


>AT2G32580.1 | Symbols:  | unknown protein | chr2:13827849-13829135
           FORWARD
          Length = 183

 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 16/169 (9%)

Query: 13  NGALKIVLALVATFLIGYVVRPQL--HSRES--SSAQASCPCDCDCSEEFALFLPL---- 64
             ALK+ LAL+A  +IGY++ P L  H  E+   SA +   C CDCS    L +P     
Sbjct: 5   TAALKVGLALLALSMIGYILGPPLYWHLTEALAVSATSCSACVCDCSSLPLLTIPTGLSN 64

Query: 65  ----DCSNDDPDIHEEMEKDIVALLSEEIALQRRVANDSLEHTR--ALVMDARKASLHYQ 118
               DC+  DP+++E+ EK+   LL+EE  L++R A    +H R    +++A+K +  YQ
Sbjct: 65  GSFTDCAKRDPEVNEDTEKNYAELLTEE--LKQREAASMEKHKRVDTGLLEAKKITSSYQ 122

Query: 119 KEAEKCNXXXXXXXXXXXXXXXXXXXXYKLTAEWEKRARELGWEEDSTR 167
           KEA+KCN                     KLT+ WE+RAR+ G+++ +T+
Sbjct: 123 KEADKCNSGMETCEEAREKAEKALVEQKKLTSMWEQRARQKGYKDGATK 171


>AT2G24290.1 | Symbols:  | unknown protein | chr2:10338779-10339859
           FORWARD
          Length = 173

 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 14/159 (8%)

Query: 18  IVLALVATFLI-GYVVRPQLHSRESSSAQAS---CP-CDCDCSEEFALF--------LPL 64
           ++ ++V+  L+ G  +  +L+     SA+++   CP C CD     +L         L +
Sbjct: 13  VIFSVVSALLVCGPALYWKLNKGFVGSARSTNSICPPCVCDFPPPLSLLQIAPGLANLSI 72

Query: 65  -DCSNDDPDIHEEMEKDIVALLSEEIALQRRVANDSLEHTRALVMDARKASLHYQKEAEK 123
             C +DDP++ EEMEK  V LL+EE+ LQ  VA++   H    + +A++ +  YQKEAEK
Sbjct: 73  TGCGSDDPELKEEMEKPFVDLLTEELKLQEAVADEHSRHMNVTLAEAKRVASQYQKEAEK 132

Query: 124 CNXXXXXXXXXXXXXXXXXXXXYKLTAEWEKRARELGWE 162
           CN                     K+T  WE+RAR+LGWE
Sbjct: 133 CNAATEICESARERAQALLLKERKITFLWERRARQLGWE 171


>AT4G30996.1 | Symbols:  | unknown protein | chr4:15101464-15102461
           FORWARD
          Length = 172

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 56/98 (57%)

Query: 65  DCSNDDPDIHEEMEKDIVALLSEEIALQRRVANDSLEHTRALVMDARKASLHYQKEAEKC 124
           DC +DDP++ +EMEK  V LL+EE+ LQ  VA++   H    + +A++ +  YQKEAEKC
Sbjct: 73  DCGSDDPELKQEMEKQFVDLLTEELKLQEAVADEHSRHMNVTLAEAKRVASQYQKEAEKC 132

Query: 125 NXXXXXXXXXXXXXXXXXXXXYKLTAEWEKRARELGWE 162
           N                     K+T+ WEKRAR+ GWE
Sbjct: 133 NAATEICESARERAEALLIKERKITSLWEKRARQSGWE 170


>AT4G04360.1 | Symbols:  | unknown protein | chr4:2133142-2133866
           REVERSE
          Length = 176

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 80/162 (49%), Gaps = 12/162 (7%)

Query: 17  KIVLALVATFLIGYVVRPQL--HSRES--SSAQASCP-CDCDCSEEFALFLPLDCSND-- 69
           K+V  ++   ++ Y+  P L  H  E+   S  +SCP C CDCS +  L +P   SN   
Sbjct: 10  KVVTVVMGLCIVAYIAGPSLYWHLNETIADSLHSSCPPCVCDCSSQPLLSIPDGLSNHSF 69

Query: 70  -DPDIHEEMEKDIVALLSEEIA--LQRRVANDSLEHTRA--LVMDARKASLHYQKEAEKC 124
            D   HEE  ++  +  +E +A  L+ R A    +  RA  L++DA+KA+  YQKEA+KC
Sbjct: 70  LDCMRHEEGSEESESSFTEMVAEELKLREAQAQEDEWRADRLLLDAKKAASQYQKEADKC 129

Query: 125 NXXXXXXXXXXXXXXXXXXXXYKLTAEWEKRARELGWEEDST 166
           +                     +L+  WE RAR+ GW+E + 
Sbjct: 130 SMGMETCELAREKAEAALDEQRRLSYMWELRARQGGWKEGTV 171