Jatropha Genome Database

JcCA0273941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273941.10 - phase: 0 /partial
         (191 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18110.1 | Symbols: NCBP | NCBP (NOVEL CAP-BINDING PROTEIN); ...   267   3e-72
AT4G18040.1 | Symbols: EIF4E, CUM1, AT.EIF4E1 | EIF4E (EUKARYOTI...   127   5e-30
AT1G29550.1 | Symbols:  | eukaryotic translation initiation fact...   106   8e-24
AT1G29590.1 | Symbols:  | eukaryotic translation initiation fact...   105   2e-23
AT5G35620.2 | Symbols: LSP1, EIF(ISO)4E, LSP, EIF4E2 | LSP1 (LOS...    96   1e-20
AT5G35620.1 | Symbols: LSP1, EIF(ISO)4E, LSP, EIF4E2 | LSP1 (LOS...    96   2e-20

>AT5G18110.1 | Symbols: NCBP | NCBP (NOVEL CAP-BINDING PROTEIN); RNA
           binding / translation initiation factor |
           chr5:5989105-5990588 REVERSE
          Length = 221

 Score =  267 bits (683), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 138/159 (86%), Gaps = 1/159 (0%)

Query: 27  IIDKEAEERQARDLKAGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEFSTVEGFWV 86
           + D  +EER++R+LK G HPL++KF  WYTRRTPGVR Q SYEDNIKK+VEFSTVEGFW 
Sbjct: 25  VTDSVSEERRSRELKDGDHPLRYKFSIWYTRRTPGVRNQ-SYEDNIKKMVEFSTVEGFWA 83

Query: 87  CYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANSNGGKWIIRFKKVVSGRYWEDLVLALV 146
           CYCHLAR S LPSPTDLH FK+GIRPLWED AN NGGKWIIRF KVVS R+WEDL+LALV
Sbjct: 84  CYCHLARSSLLPSPTDLHFFKDGIRPLWEDGANCNGGKWIIRFSKVVSARFWEDLLLALV 143

Query: 147 GDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQASDG 185
           GDQLD  DNICGAVLS+RFNEDI+SVWNRNASDHQA  G
Sbjct: 144 GDQLDDADNICGAVLSVRFNEDIISVWNRNASDHQAVMG 182


>AT4G18040.1 | Symbols: EIF4E, CUM1, AT.EIF4E1 | EIF4E (EUKARYOTIC
           TRANSLATION INITATION FACTOR 4E); RNA binding / RNA cap
           binding / protein binding / translation initiation
           factor | chr4:10016724-10018151 REVERSE
          Length = 235

 Score =  127 bits (319), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 3/139 (2%)

Query: 45  HPLKHKFVFWYTRRTPGVRT-QTSYEDNIKKIVEFSTVEGFWVCYCHLARPSSLPSPTDL 103
           HPL+H + FW+    P V++ QTS+  +++ +  FSTVE FW  Y ++  PS L    D 
Sbjct: 60  HPLEHSWTFWFDN--PAVKSKQTSWGSSLRPVFTFSTVEEFWSLYNNMKHPSKLAHGADF 117

Query: 104 HLFKEGIRPLWEDSANSNGGKWIIRFKKVVSGRYWEDLVLALVGDQLDYGDNICGAVLSI 163
           + FK  I P WED   +NGGKW + F K  S + W   +LAL+G+Q D+GD ICGAV++I
Sbjct: 118 YCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALIGEQFDHGDEICGAVVNI 177

Query: 164 RFNEDILSVWNRNASDHQA 182
           R  ++ +S+W +NAS+  A
Sbjct: 178 RGKQERISIWTKNASNEAA 196


>AT1G29550.1 | Symbols:  | eukaryotic translation initiation factor
           4E, putative / eIF-4E, putative / eIF4E, putative / mRNA
           cap-binding protein, putative | chr1:10330514-10332094
           FORWARD
          Length = 240

 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 81/139 (58%), Gaps = 3/139 (2%)

Query: 45  HPLKHKFVFWYTRRTPGVRT-QTSYEDNIKKIVEFSTVEGFWVCYCHLARPSSLPSPTDL 103
           H  ++ + FW+    P  ++ Q  +  +++ +  F T+E FW  Y ++  P+   S  DL
Sbjct: 65  HCFQNSWTFWFDN--PSSKSNQVIWGSSLRSLYTFGTIEEFWSLYNNIHPPTKWVSGADL 122

Query: 104 HLFKEGIRPLWEDSANSNGGKWIIRFKKVVSGRYWEDLVLALVGDQLDYGDNICGAVLSI 163
           + FK+ I P WED   +NGGKW + F K      W + +LALVG+Q D GD ICGAVL+ 
Sbjct: 123 YCFKDKIEPKWEDPICANGGKWSMMFPKATLECNWLNTLLALVGEQFDQGDEICGAVLNF 182

Query: 164 RFNEDILSVWNRNASDHQA 182
           R   D +S+W +NA++ +A
Sbjct: 183 RARGDRISLWTKNAANEEA 201


>AT1G29590.1 | Symbols:  | eukaryotic translation initiation factor
           4E, putative / eIF-4E, putative / eIF4E, putative / mRNA
           cap-binding protein, putative | chr1:10339937-10341628
           FORWARD
          Length = 285

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 3/139 (2%)

Query: 45  HPLKHKFVFWYTRRTPGVRT-QTSYEDNIKKIVEFSTVEGFWVCYCHLARPSSLPSPTDL 103
           H  ++ + FW+    P  ++ Q  +  +++ +  F+T+E FW  Y ++  P+   S +DL
Sbjct: 110 HCFQNSWTFWFD--NPSSKSNQVIWGSSLRSLYTFATIEEFWSLYNNIHPPTKWVSGSDL 167

Query: 104 HLFKEGIRPLWEDSANSNGGKWIIRFKKVVSGRYWEDLVLALVGDQLDYGDNICGAVLSI 163
           + FK+ I P WED   +NGGKW + F +      W + +LALVG+Q D GD ICGAVL+ 
Sbjct: 168 YCFKDKIEPKWEDPICANGGKWTMFFPRATLESNWLNTLLALVGEQFDQGDEICGAVLNF 227

Query: 164 RFNEDILSVWNRNASDHQA 182
           R   D +S+W + A++ +A
Sbjct: 228 RTRGDRISLWTKKAANEEA 246


>AT5G35620.2 | Symbols: LSP1, EIF(ISO)4E, LSP, EIF4E2 | LSP1 (LOSS
           OF SUSCEPTIBILITY TO POTYVIRUS 1); RNA 7-methylguanosine
           cap binding / RNA binding / translation initiation
           factor | chr5:13825570-13826331 REVERSE
          Length = 167

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)

Query: 32  AEERQARDLKAGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEFSTVEGFWVCYCHL 91
           A E  A + +   H L+ K+ FW+  ++   +   ++  +++K   F TVE FW  +  +
Sbjct: 13  AAELPATEAEKQPHKLERKWSFWFDNQS---KKGAAWGASLRKAYTFDTVEDFWGLHETI 69

Query: 92  ARPSSLPSPTDLHLFKEGIRPLWEDSANSNGGKW---IIRFKKVVSGRYWEDLVLALVGD 148
            + S L +  ++HLFK G+ P WED   +NGGKW   +   +K    + W + ++AL+G+
Sbjct: 70  FQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGE 129

Query: 149 QLDYGDNICGAVLSIR--FNEDILSVWNRNASDH 180
           Q D  D ICG V S+R    +D LS+W R  S+ 
Sbjct: 130 QFDEADEICGVVASVRPQSKQDKLSLWTRTKSNE 163


>AT5G35620.1 | Symbols: LSP1, EIF(ISO)4E, LSP, EIF4E2 | LSP1 (LOSS
           OF SUSCEPTIBILITY TO POTYVIRUS 1); RNA 7-methylguanosine
           cap binding / RNA binding / translation initiation
           factor | chr5:13824946-13826331 REVERSE
          Length = 198

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 8/154 (5%)

Query: 32  AEERQARDLKAGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEFSTVEGFWVCYCHL 91
           A E  A + +   H L+ K+ FW+  ++   +   ++  +++K   F TVE FW  +  +
Sbjct: 13  AAELPATEAEKQPHKLERKWSFWFDNQS---KKGAAWGASLRKAYTFDTVEDFWGLHETI 69

Query: 92  ARPSSLPSPTDLHLFKEGIRPLWEDSANSNGGKW---IIRFKKVVSGRYWEDLVLALVGD 148
            + S L +  ++HLFK G+ P WED   +NGGKW   +   +K    + W + ++AL+G+
Sbjct: 70  FQTSKLTANAEIHLFKAGVEPKWEDPECANGGKWTWVVTANRKEALDKGWLETLMALIGE 129

Query: 149 QLDYGDNICGAVLSIR--FNEDILSVWNRNASDH 180
           Q D  D ICG V S+R    +D LS+W R  S+ 
Sbjct: 130 QFDEADEICGVVASVRPQSKQDKLSLWTRTKSNE 163