Jatropha Genome Database

JcCA0273631.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273631.30 - phase: 1 /partial
         (66 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66730.1 | Symbols:  | zinc finger (C2H2 type) family protein...   108   6e-25
AT3G50700.1 | Symbols: AtIDD2 | AtIDD2 (Arabidopsis thaliana Ind...   105   6e-24
AT4G02670.1 | Symbols: AtIDD12 | AtIDD12 (Arabidopsis thaliana I...   104   1e-23
AT3G13810.1 | Symbols: AtIDD11 | AtIDD11 (Arabidopsis thaliana I...   102   4e-23
AT1G55110.1 | Symbols: AtIDD7 | AtIDD7 (Arabidopsis thaliana Ind...   102   4e-23
AT5G03150.1 | Symbols: JKD | JKD (JACKDAW); nucleic acid binding...   102   5e-23
AT1G03840.1 | Symbols: MGP | MGP (Magpie); nucleic acid binding ...   100   2e-22
AT2G02080.1 | Symbols: AtIDD4 | AtIDD4 (Arabidopsis thaliana Ind...   100   3e-22
AT1G14580.1 | Symbols:  | zinc finger (C2H2 type) family protein...    99   6e-22
AT1G03840.2 | Symbols: MGP | MGP (Magpie); nucleic acid binding ...    99   6e-22
AT2G02070.1 | Symbols: AtIDD5 | AtIDD5 (Arabidopsis thaliana Ind...    99   8e-22
AT3G45260.1 | Symbols:  | zinc finger (C2H2 type) family protein...    97   2e-21
AT5G44160.1 | Symbols: NUC | NUC (nutcracker); nucleic acid bind...    97   2e-21
AT5G60470.1 | Symbols:  | nucleic acid binding / transcription f...    94   1e-20
AT1G25250.1 | Symbols: AtIDD16 | AtIDD16 (Arabidopsis thaliana I...    90   3e-19
AT2G01940.3 | Symbols: SGR5, ATIDD15 | nucleic acid binding / tr...    89   5e-19
AT2G01940.1 | Symbols: SGR5, ATIDD15 | nucleic acid binding / tr...    89   5e-19
AT1G68130.1 | Symbols: AtIDD14 | AtIDD14 (Arabidopsis thaliana I...    89   8e-19
AT2G02080.2 | Symbols: AtIDD4 | AtIDD4 (Arabidopsis thaliana Ind...    75   8e-15
AT1G34370.3 | Symbols: STOP1 | STOP1 (sensitive to proton rhizot...    48   1e-06
AT1G34370.1 | Symbols: STOP1 | STOP1 (sensitive to proton rhizot...    48   1e-06
AT1G34370.2 | Symbols: STOP1 | STOP1 (sensitive to proton rhizot...    48   1e-06
AT5G22890.1 | Symbols:  | zinc finger (C2H2 type) family protein...    47   2e-06

>AT5G66730.1 | Symbols:  | zinc finger (C2H2 type) family protein
          | chr5:26641914-26643883 REVERSE
          Length = 500

 Score =  108 bits (271), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/48 (97%), Positives = 48/48 (100%)

Query: 1  DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
          DPDAEV+ALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 42 DPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 89


>AT3G50700.1 | Symbols: AtIDD2 | AtIDD2 (Arabidopsis thaliana
          Indeterminate(ID)-Domain 2); nucleic acid binding /
          transcription factor/ zinc ion binding |
          chr3:18840945-18842829 FORWARD
          Length = 452

 Score =  105 bits (262), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 44/48 (91%), Positives = 48/48 (100%)

Query: 1  DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
          DP++EV+ALSPKTL+ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 44 DPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 91


>AT4G02670.1 | Symbols: AtIDD12 | AtIDD12 (Arabidopsis thaliana
           Indeterminate(ID)-Domain 12); nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr4:1176190-1178489 REVERSE
          Length = 402

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 46/48 (95%), Positives = 48/48 (100%)

Query: 1   DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
           DPDAEV+ALSPKTL+ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 63  DPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 110


>AT3G13810.1 | Symbols: AtIDD11 | AtIDD11 (Arabidopsis thaliana
           Indeterminate(ID)-Domain 11); nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr3:4544941-4547300 FORWARD
          Length = 513

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 48/48 (100%)

Query: 1   DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
           DP++EV+ALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 80  DPESEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 127


>AT1G55110.1 | Symbols: AtIDD7 | AtIDD7 (Arabidopsis thaliana
           Indeterminate(ID)-Domain 7); nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr1:20560406-20562625 REVERSE
          Length = 455

 Score =  102 bits (254), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 48/48 (100%)

Query: 1   DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
           DP+AEVMALSPKTLMATNRF+CE+CNKGFQRDQNLQLH+RGHNLPWKL
Sbjct: 73  DPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKL 120


>AT5G03150.1 | Symbols: JKD | JKD (JACKDAW); nucleic acid binding /
           protein binding / protein homodimerization/
           transcription factor/ zinc ion binding |
           chr5:745849-748678 FORWARD
          Length = 503

 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 47/48 (97%)

Query: 1   DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
           DPDA+V+ALSP TLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 63  DPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 110


>AT1G03840.1 | Symbols: MGP | MGP (Magpie); nucleic acid binding /
          protein binding / transcription factor/ zinc ion
          binding | chr1:967596-970058 REVERSE
          Length = 506

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/48 (91%), Positives = 47/48 (97%)

Query: 1  DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
          DP+AEV+ALSPKTLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWKL
Sbjct: 51 DPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKL 98


>AT2G02080.1 | Symbols: AtIDD4 | AtIDD4 (Arabidopsis thaliana
           Indeterminate(ID)-Domain 4); transcription factor |
           chr2:518328-521170 REVERSE
          Length = 516

 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 48/48 (100%)

Query: 1   DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
           +PDAEV+ALSPKTLMATNRF+C++CNKGFQR+QNLQLHRRGHNLPWKL
Sbjct: 64  NPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKL 111


>AT1G14580.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr1:4990070-4992442 FORWARD
          Length = 467

 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 48/48 (100%)

Query: 1   DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
           +PDAEV+ALSPKT+MATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL
Sbjct: 63  NPDAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKL 110


>AT1G03840.2 | Symbols: MGP | MGP (Magpie); nucleic acid binding /
          protein binding / transcription factor/ zinc ion
          binding | chr1:967596-970058 REVERSE
          Length = 504

 Score = 98.6 bits (244), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 47/48 (97%)

Query: 1  DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
          +P+AEV+ALSPKTLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWKL
Sbjct: 49 NPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKL 96


>AT2G02070.1 | Symbols: AtIDD5 | AtIDD5 (Arabidopsis thaliana
           Indeterminate(ID)-Domain 5); nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr2:505523-509154 FORWARD
          Length = 602

 Score = 98.6 bits (244), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 47/48 (97%)

Query: 1   DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
           + DAEV+ALSPKTLMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKL
Sbjct: 62  NSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKL 109


>AT3G45260.1 | Symbols:  | zinc finger (C2H2 type) family protein
          | chr3:16596850-16598550 REVERSE
          Length = 446

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 41/48 (85%), Positives = 46/48 (95%)

Query: 1  DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
          DPDAEV+ALSP +LM TNRF+CE+CNKGF+RDQNLQLHRRGHNLPWKL
Sbjct: 49 DPDAEVIALSPNSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKL 96


>AT5G44160.1 | Symbols: NUC | NUC (nutcracker); nucleic acid
          binding / transcription factor/ zinc ion binding |
          chr5:17773091-17775513 FORWARD
          Length = 466

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 46/48 (95%)

Query: 1  DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
          DP+AEV+ALSP TLMATNRF+CE+C KGFQRDQNLQLHRRGHNLPWKL
Sbjct: 47 DPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKL 94


>AT5G60470.1 | Symbols:  | nucleic acid binding / transcription
          factor/ zinc ion binding | chr5:24320614-24322790
          FORWARD
          Length = 450

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 46/47 (97%)

Query: 2  PDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
          P+AEV++LSPK+LMATNRF CEICNKGFQR+QNLQLH+RGHNLPWKL
Sbjct: 46 PNAEVISLSPKSLMATNRFFCEICNKGFQREQNLQLHKRGHNLPWKL 92


>AT1G25250.1 | Symbols: AtIDD16 | AtIDD16 (Arabidopsis thaliana
          Indeterminate(ID)-Domain 16); nucleic acid binding /
          transcription factor/ zinc ion binding |
          chr1:8849549-8851520 FORWARD
          Length = 362

 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 46/49 (93%)

Query: 1  DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLL 49
          DPDAEV++LSP+TL+ ++R+VCEICN+GFQRDQNLQ+HRR H +PWKLL
Sbjct: 20 DPDAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLL 68


>AT2G01940.3 | Symbols: SGR5, ATIDD15 | nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr2:432652-434917 FORWARD
          Length = 446

 Score = 89.0 bits (219), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 46/49 (93%)

Query: 1   DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLL 49
           DPDAEV++LSP+TL+ ++R++CEICN+GFQRDQNLQ+HRR H +PWKLL
Sbjct: 54  DPDAEVVSLSPRTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLL 102


>AT2G01940.1 | Symbols: SGR5, ATIDD15 | nucleic acid binding /
           transcription factor/ zinc ion binding |
           chr2:432652-434917 FORWARD
          Length = 445

 Score = 89.0 bits (219), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 46/49 (93%)

Query: 1   DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLL 49
           DPDAEV++LSP+TL+ ++R++CEICN+GFQRDQNLQ+HRR H +PWKLL
Sbjct: 54  DPDAEVVSLSPRTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLL 102


>AT1G68130.1 | Symbols: AtIDD14 | AtIDD14 (Arabidopsis thaliana
          Indeterminate(ID)-Domain 14); nucleic acid binding /
          transcription factor/ zinc ion binding |
          chr1:25532484-25534317 FORWARD
          Length = 419

 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 46/49 (93%)

Query: 1  DPDAEVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLL 49
          DP+AEV++LSP+TL+ ++R+VCEICN+GFQRDQNLQ+HRR H +PWKLL
Sbjct: 51 DPEAEVVSLSPRTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLL 99


>AT2G02080.2 | Symbols: AtIDD4 | AtIDD4 (Arabidopsis thaliana
          Indeterminate(ID)-Domain 4); transcription factor |
          chr2:518328-520619 REVERSE
          Length = 439

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 30/34 (88%), Positives = 34/34 (100%)

Query: 15 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 48
          MATNRF+C++CNKGFQR+QNLQLHRRGHNLPWKL
Sbjct: 1  MATNRFICDVCNKGFQREQNLQLHRRGHNLPWKL 34


>AT1G34370.3 | Symbols: STOP1 | STOP1 (sensitive to proton
           rhizotoxicity 1); nucleic acid binding / transcription
           factor/ zinc ion binding | chr1:12551449-12552501
           FORWARD
          Length = 350

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 5   EVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLLDSLIYEHSFEKPGN 63
           E++ L  + ++A +   C IC KGF+RD NL++H RGH   +K   +L   +    PG+
Sbjct: 80  EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGS 138


>AT1G34370.1 | Symbols: STOP1 | STOP1 (sensitive to proton
           rhizotoxicity 1); nucleic acid binding / transcription
           factor/ zinc ion binding | chr1:12551002-12552501
           FORWARD
          Length = 499

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 5   EVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLLDSLIYEHSFEKPGN 63
           E++ L  + ++A +   C IC KGF+RD NL++H RGH   +K   +L   +    PG+
Sbjct: 229 EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGS 287


>AT1G34370.2 | Symbols: STOP1 | STOP1 (sensitive to proton
           rhizotoxicity 1); nucleic acid binding / transcription
           factor/ zinc ion binding | chr1:12551002-12552501
           FORWARD
          Length = 499

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 5   EVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLLDSLIYEHSFEKPGN 63
           E++ L  + ++A +   C IC KGF+RD NL++H RGH   +K   +L   +    PG+
Sbjct: 229 EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGS 287


>AT5G22890.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr5:7653541-7654662 REVERSE
          Length = 373

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 5   EVMALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLLDSLIYEHSFEKPG 62
           +++ L    L+A     C+IC KGF+RD NL++H R H   +K  ++LI   S +K G
Sbjct: 202 DILELDVADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTREALISPTSQDKKG 259