Jatropha Genome Database

JcCA0273051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273051.10 - phase: 1 /partial
         (55 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52720.2 | Symbols: ATACA1, ACA1 | ACA1 (ALPHA CARBONIC ANHYD...    52   1e-07
AT3G52720.1 | Symbols: ATACA1, ACA1 | ACA1 (ALPHA CARBONIC ANHYD...    52   1e-07

>AT3G52720.2 | Symbols: ATACA1, ACA1 | ACA1 (ALPHA CARBONIC
          ANHYDRASE 1); carbonate dehydratase/ zinc ion binding |
          chr3:19539617-19541116 REVERSE
          Length = 230

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 1  TAAVKFGYYGAVGPEKWGSLSPTYSECSKGKSQSPINIIKNDTVLDSNLKPLIRD 55
          T  V FGY G  GP +WG L+P ++ C+ GK QSPI+I +     +  L  + R+
Sbjct: 26 TEGVVFGYKGKNGPNQWGHLNPHFTTCAVGKLQSPIDIQRRQIFYNHKLNSIHRE 80


>AT3G52720.1 | Symbols: ATACA1, ACA1 | ACA1 (ALPHA CARBONIC
          ANHYDRASE 1); carbonate dehydratase/ zinc ion binding |
          chr3:19538804-19541116 REVERSE
          Length = 284

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 1  TAAVKFGYYGAVGPEKWGSLSPTYSECSKGKSQSPINIIKNDTVLDSNLKPLIRD 55
          T  V FGY G  GP +WG L+P ++ C+ GK QSPI+I +     +  L  + R+
Sbjct: 26 TEGVVFGYKGKNGPNQWGHLNPHFTTCAVGKLQSPIDIQRRQIFYNHKLNSIHRE 80