Jatropha Genome Database

JcCA0272091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0272091.10 + phase: 0 /partial
         (423 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26920.1 | Symbols:  | ubiquitin-associated (UBA)/TS-N domain...   285   4e-77
AT5G12120.1 | Symbols:  | ubiquitin-associated (UBA)/TS-N domain...   276   2e-74

>AT2G26920.1 | Symbols:  | ubiquitin-associated (UBA)/TS-N
           domain-containing protein | chr2:11489648-11491588
           FORWARD
          Length = 646

 Score =  285 bits (729), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 188/431 (43%), Positives = 260/431 (60%), Gaps = 58/431 (13%)

Query: 23  QKASDKSSGSTNTASGTPASAYNPISGTFHTLE-IPSATSSPHFHDNGRFRNIDDTDEHS 81
           QKAS K S S N  S   AS YNP+ GTF  L+ +  A+ SP  +   RFR+ID+ D + 
Sbjct: 24  QKASPKPSLSVNGNSSLAASGYNPLLGTFQALDSVSIASISPLQYS--RFRSIDEADVNG 81

Query: 82  SSPHGTVSEYDSVSNNGSCSGESEDPKDKTTS-STRQETVPGLENDRREKIRLKNEKKHQ 140
                   E DSVSNNGSCSGESED K+KTT+   +QE +PG +ND+REK+R KNE+KHQ
Sbjct: 82  I-------ESDSVSNNGSCSGESEDHKEKTTNLPLKQEVIPGADNDKREKVRQKNERKHQ 134

Query: 141 RQKERRAQELHERCSGYLMSRKLEALSEQLVAMGFSHERATLALVLNEGRVEESVNWLFE 200
           RQKERRAQEL+E+CS YL+SRKLEA ++Q+VAMG S E AT AL++N+G+VEESV+WLF+
Sbjct: 135 RQKERRAQELNEKCSTYLISRKLEARTQQIVAMGISQEHATTALMMNDGKVEESVHWLFD 194

Query: 201 GNEEEARNKDSKLGTSSNLKIDISEELAQISVLEVRYKCSKQEVERAIVACEGDLLKAEE 260
             EEE   +   + +  NLKIDI+EELA+I+ +E++ KC++QE+ERA+V  EGDL +AEE
Sbjct: 195 RLEEEIEKQ--SIQSPGNLKIDITEELARITKMELQLKCTRQEIERAVVQAEGDLDRAEE 252

Query: 261 ILQAQKLEQPATPLTSEEVTDA----------------NDLKRTHEKPLSSSITIQQRRN 304
           +L+  K E+ + P+  EE  D                 +D++R+ E P   S  +   R+
Sbjct: 253 VLKGTKYEEFSVPVKQEECGDPLTPSNGKLIVGIGYQNSDVERS-EIP---SPGLHPTRD 308

Query: 305 EQDFNYAKTSIALPMYSEPGNRSL-QPLN------------QSRSLADKRWTATG--TSP 349
           +++FNY K+    P  +E  N+ L QP+             QS +LADKRW  T      
Sbjct: 309 DKNFNYTKS----PSTTESVNKMLAQPMKRPELKLDWPKPQQSAALADKRWPPTTGQVPS 364

Query: 350 SFSLGMASPGQVTPQSAKLEVRLGVSGNEGKNHQHILREP------IVMMQRRQSINAKQ 403
           +     +SP      + ++E R   SGNE KN Q   ++P      +VM QR Q +    
Sbjct: 365 ASYSLPSSPSPSPQPAVRVEARYLASGNEFKNFQQQQQQPANRESVMVMRQRPQVVITNP 424

Query: 404 NQVPSISASPS 414
               S+SA P+
Sbjct: 425 VPTSSMSAPPT 435


>AT5G12120.1 | Symbols:  | ubiquitin-associated (UBA)/TS-N
           domain-containing protein | chr5:3916229-3918088 REVERSE
          Length = 619

 Score =  276 bits (706), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 181/434 (41%), Positives = 255/434 (58%), Gaps = 47/434 (10%)

Query: 23  QKASDKSSGSTNTASGTPASAYNPISGTFHTLEIPSATSSPHFHDNGRFRNIDDTDEHSS 82
           QK   K+SGS   +S      YNP+ GTF T+E  SAT S   H+NGRFR+ID++D    
Sbjct: 19  QKTPSKASGSMGGSS-VVVGGYNPLLGTFQTIESLSATGSSSLHNNGRFRHIDESDS--- 74

Query: 83  SPHGTVSEYDSVSNNGSCSGESEDPKDK---TTSSTRQETVPGLENDRREKIRLKNEKKH 139
               T ++ DSVSNNGS SGESED K+K   T+ + +QE +PG +ND+R+K+RLKNE+KH
Sbjct: 75  ----TGADCDSVSNNGSWSGESEDHKEKVPSTSIAAKQEIIPGADNDKRDKMRLKNERKH 130

Query: 140 QRQKERRAQELHERCSGYLMSRKLEALSEQLVAMGFSHERATLALVLNEGRVEESVNWLF 199
           QRQKE+RAQELHERC  YLMSRKLE  ++ +++MG  HERAT AL+LNEG++EES+NWLF
Sbjct: 131 QRQKEKRAQELHERCCQYLMSRKLEVHAQLIISMGIPHERATYALMLNEGKIEESINWLF 190

Query: 200 EGNEEEARNKDSKLG-TSSNLKIDISEELAQISVLEVRYKCSKQEVERAIVACEGDLLKA 258
           +  +  A+  D KL  TS NLK+DIS+EL +I  LE +YKC+KQ+VERA+V  EGD+ KA
Sbjct: 191 D--DGGAKVADKKLDPTSGNLKLDISQELGRILELETKYKCTKQDVERAVVTAEGDIEKA 248

Query: 259 EEILQAQKLEQPATPLTSEEVTDANDLKRTH-EKPLSSSITIQQRR-------------- 303
           EE L+ QK +Q       E+++D+  +  +     L+S  T+ Q +              
Sbjct: 249 EEALRRQKQDQSTASRKPEDISDSTSVNNSKVPSVLTSQNTVGQLQPNSGMYPAGREEAL 308

Query: 304 NEQDFNYAKTSIALPMYSEPGNRSLQPLNQSRSLADKRWTATGTSPSFSLGMASPGQVTP 363
           + ++  Y + S  +   SE  N+S+  L   R     +W     +         P Q TP
Sbjct: 309 DRKNLGYPRGSSYISGESE--NQSVNSL--ERIHMKLQWMKLQQNAPLEENKRIPYQQTP 364

Query: 364 QSAKLEVRLGVS--GNEGKN-HQHILREPIVMM-------QRRQSINAKQNQVPSISAS- 412
            S   E    V+  G++ K   Q  +REP+++M       QR QS N     V +++AS 
Sbjct: 365 LSRSTEETHYVTALGDQFKRLQQQDMREPVMVMQQQQQQQQRSQSANTNVLPVSTMNASF 424

Query: 413 ---PSVTAGWYSNN 423
               +  +GW+  N
Sbjct: 425 TGAAAAGSGWHPAN 438