Jatropha Genome Database
- JcCA0271581.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0271581.10 + phase: 0 /partial
(250 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE... 274 5e-74
AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROT... 250 5e-67
AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); au... 248 2e-66
AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); au... 248 4e-66
AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5); ubiq... 224 5e-59
AT4G24390.1 | Symbols: | F-box family protein (FBX14) | chr4:12... 210 6e-55
AT4G24390.2 | Symbols: | F-box family protein (FBX14) | chr4:12... 210 6e-55
AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1); p... 94 1e-19
AT4G15475.1 | Symbols: | F-box family protein (FBL4) | chr4:884... 55 3e-08
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | SKP2B; ubiquitin-protei... 48 5e-06
>AT3G62980.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE
1); auxin binding / protein binding / ubiquitin-protein
ligase | chr3:23273479-23276181 REVERSE
Length = 594
Score = 274 bits (700), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 138/248 (55%), Positives = 174/248 (70%)
Query: 3 NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
NL ELD++E+ +DD SG WLS FP+ ++SL LN + L SEV+F ALERLVTRC +LK L
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216
Query: 63 KVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEA 122
K+N+ + L++L LL APQL ELGTG ++ E+ Y+ L A S CK L LSG W+A
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276
Query: 123 MALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGSH 182
+ YLP +Y C+ LT LNLSYA +QS +L LL CP+L+RLWVLD +ED GLE + S
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336
Query: 183 CPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNC 242
C L ELRVFP++PF E +TE G V+VS GC +L VLYFCRQMTNAA+ TI +N
Sbjct: 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR 396
Query: 243 PNFTHFRL 250
PN T FRL
Sbjct: 397 PNMTRFRL 404
>AT4G03190.1 | Symbols: GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROTEIN
1); auxin binding / protein binding / ubiquitin-protein
ligase | chr4:1405108-1407057 REVERSE
Length = 585
Score = 250 bits (639), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 130/248 (52%), Positives = 170/248 (68%)
Query: 3 NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
NL L+++E ++D G WLS FPE+ +SL L+F+ L+SEV LERLV+R +LK L
Sbjct: 153 NLRVLELRECIVEDLGGDWLSYFPESSTSLVSLDFSCLDSEVKISDLERLVSRSPNLKSL 212
Query: 63 KVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEA 122
K+N ++LD L LL APQLTELGTGSF+ +L + ++ L AFS+CK L +LSGLW+
Sbjct: 213 KLNPAVTLDGLVSLLRCAPQLTELGTGSFAAQLKPEAFSKLSEAFSNCKQLQSLSGLWDV 272
Query: 123 MALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGSH 182
+ YLP LY C LT LNLSYA ++ +L LLR C +L++LWV+D +EDKGLEAV S+
Sbjct: 273 LPEYLPALYSVCPGLTSLNLSYATVRMPDLVELLRRCSKLQKLWVMDLIEDKGLEAVASY 332
Query: 183 CPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNC 242
C L ELRVFP++P + +TE G V VS GCR+L VLYFC Q TNAA+ TI +
Sbjct: 333 CKELRELRVFPSEPDLDATNIPLTEQGLVFVSKGCRKLESVLYFCVQFTNAALFTIARKR 392
Query: 243 PNFTHFRL 250
PN FRL
Sbjct: 393 PNLKCFRL 400
>AT3G26810.1 | Symbols: AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); auxin
binding / ubiquitin-protein ligase |
chr3:9868342-9870464 FORWARD
Length = 575
Score = 248 bits (634), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/249 (50%), Positives = 163/249 (65%), Gaps = 2/249 (0%)
Query: 3 NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
+L +LD+QEN IDD G WLSCFP+ ++L LNFA L E N ALERLV R +LK L
Sbjct: 152 HLRDLDLQENEIDDHRGQWLSCFPDTCTTLVTLNFACLEGETNLVALERLVARSPNLKSL 211
Query: 63 KVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEA 122
K+N+ + LD L RL+ APQ+ +LG GS+ + ++ Y L C +L +LSG EA
Sbjct: 212 KLNRAVPLDALARLMACAPQIVDLGVGSYENDPDSESYLKLMAVIKKCTSLRSLSGFLEA 271
Query: 123 MALYLPVLYPACTNLTFLNLSYAA-LQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGS 181
L +P C NLT LNLSYAA + L L++HC +L+RLW+LD++ DKGLE V S
Sbjct: 272 APHCLSAFHPICHNLTSLNLSYAAEIHGSHLIKLIQHCKKLQRLWILDSIGDKGLEVVAS 331
Query: 182 HCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQN 241
C L+ELRVFP+D VTE G VA+S GC +LH +LYFC+QMTNAA+ T+ +N
Sbjct: 332 TCKELQELRVFPSDLLGGGNT-AVTEEGLVAISAGCPKLHSILYFCQQMTNAALVTVAKN 390
Query: 242 CPNFTHFRL 250
CPNF FRL
Sbjct: 391 CPNFIRFRL 399
>AT1G12820.1 | Symbols: AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); auxin
binding / ubiquitin-protein ligase |
chr1:4368879-4370780 REVERSE
Length = 577
Score = 248 bits (632), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 127/250 (50%), Positives = 164/250 (65%), Gaps = 2/250 (0%)
Query: 3 NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
+L ELD+QEN IDD G WL+CFP++ ++L LNFA L E N ALERLV R +LK L
Sbjct: 152 HLRELDLQENEIDDHRGQWLNCFPDSCTTLMSLNFACLKGETNVAALERLVARSPNLKSL 211
Query: 63 KVNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEA 122
K+N+ + LD L RL+ APQL +LG GS+ E + + L A +L +LSG E
Sbjct: 212 KLNRAVPLDALARLMSCAPQLVDLGVGSYENEPDPESFAKLMTAIKKYTSLRSLSGFLEV 271
Query: 123 MALYLPVLYPACTNLTFLNLSYAA-LQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGS 181
L LP YP C NL LNLSYAA +Q L L++ C +L+RLW+LD++ DKGL V +
Sbjct: 272 APLCLPAFYPICQNLISLNLSYAAEIQGNHLIKLIQLCKRLQRLWILDSIGDKGLAVVAA 331
Query: 182 HCPLLEELRVFPADPFDEEIIHG-VTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQ 240
C L+ELRVFP+D EE + VTE G VA+S GC +LH +LYFC+QMTNAA+ + +
Sbjct: 332 TCKELQELRVFPSDVHGEEDNNASVTEVGLVAISAGCPKLHSILYFCKQMTNAALIAVAK 391
Query: 241 NCPNFTHFRL 250
NCPNF FRL
Sbjct: 392 NCPNFIRFRL 401
>AT5G49980.1 | Symbols: AFB5 | AFB5 (Auxin F-Box protein 5);
ubiquitin-protein ligase | chr5:20334420-20336531
REVERSE
Length = 619
Score = 224 bits (570), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 160/250 (64%), Gaps = 3/250 (1%)
Query: 3 NLTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVL 62
L LD+ E+ + D W+SCFPE+ + LE L F + + +NF ALE LV R LK L
Sbjct: 202 KLKVLDLIESEVTDDEVDWISCFPEDVTCLESLAFDCVEAPINFKALEGLVARSPFLKKL 261
Query: 63 KVNKNISLDQLQRLLVGAPQLTELGTGSFS--QELSTQQYTDLENAFSHCKNLDTLSGLW 120
++N+ +SL +L RLL+GAPQLT LGTGSFS +E ++Q D AF CK++ LSG
Sbjct: 262 RLNRFVSLVELHRLLLGAPQLTSLGTGSFSHDEEPQSEQEPDYAAAFRACKSVVCLSGFR 321
Query: 121 EAMALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVG 180
E M YLP ++P C NLT LN SYA + ++ +C +L+ W LD++ D+GL+AV
Sbjct: 322 ELMPEYLPAIFPVCANLTSLNFSYANISPDMFKPIILNCHKLQVFWALDSICDEGLQAVA 381
Query: 181 SHCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQ 240
+ C L ELR+FP DP E+ V+E G A+S GCR+L +LYFC++MTNAAV + +
Sbjct: 382 ATCKELRELRIFPFDP-REDSEGPVSELGLQAISEGCRKLESILYFCQRMTNAAVIAMSE 440
Query: 241 NCPNFTHFRL 250
NCP T FRL
Sbjct: 441 NCPELTVFRL 450
>AT4G24390.1 | Symbols: | F-box family protein (FBX14) |
chr4:12613909-12615966 REVERSE
Length = 623
Score = 210 bits (535), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 113/249 (45%), Positives = 150/249 (60%), Gaps = 3/249 (1%)
Query: 4 LTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVLK 63
L LD+ E+ + D W+SCFPE + LE L+F + S +NF ALE LV R LK L+
Sbjct: 203 LKVLDLMESEVTDDELDWISCFPEGETHLESLSFDCVESPINFKALEELVVRSPFLKKLR 262
Query: 64 VNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQ--QYTDLENAFSHCKNLDTLSGLWE 121
N+ +SL++L RL+V APQLT LGTGSFS + Q Q D AF CK++ LSG E
Sbjct: 263 TNRFVSLEELHRLMVRAPQLTSLGTGSFSPDNVPQGEQQPDYAAAFRACKSIVCLSGFRE 322
Query: 122 AMALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGS 181
YL + C NLT LN SYA + L ++ +C +R W LD++ D+GL+AV +
Sbjct: 323 FRPEYLLAISSVCANLTSLNFSYANISPHMLKPIISNCHNIRVFWALDSIRDEGLQAVAA 382
Query: 182 HCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQN 241
C L ELR+FP DP E+ V+ G A+S GCR+L +LYFC+ MTN AV + +N
Sbjct: 383 TCKELRELRIFPFDP-REDSEGPVSGVGLQAISEGCRKLESILYFCQNMTNGAVTAMSEN 441
Query: 242 CPNFTHFRL 250
CP T FRL
Sbjct: 442 CPQLTVFRL 450
>AT4G24390.2 | Symbols: | F-box family protein (FBX14) |
chr4:12613909-12615966 REVERSE
Length = 623
Score = 210 bits (535), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 113/249 (45%), Positives = 150/249 (60%), Gaps = 3/249 (1%)
Query: 4 LTELDIQENGIDDKSGSWLSCFPENFSSLEILNFANLNSEVNFDALERLVTRCKSLKVLK 63
L LD+ E+ + D W+SCFPE + LE L+F + S +NF ALE LV R LK L+
Sbjct: 203 LKVLDLMESEVTDDELDWISCFPEGETHLESLSFDCVESPINFKALEELVVRSPFLKKLR 262
Query: 64 VNKNISLDQLQRLLVGAPQLTELGTGSFSQELSTQ--QYTDLENAFSHCKNLDTLSGLWE 121
N+ +SL++L RL+V APQLT LGTGSFS + Q Q D AF CK++ LSG E
Sbjct: 263 TNRFVSLEELHRLMVRAPQLTSLGTGSFSPDNVPQGEQQPDYAAAFRACKSIVCLSGFRE 322
Query: 122 AMALYLPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGS 181
YL + C NLT LN SYA + L ++ +C +R W LD++ D+GL+AV +
Sbjct: 323 FRPEYLLAISSVCANLTSLNFSYANISPHMLKPIISNCHNIRVFWALDSIRDEGLQAVAA 382
Query: 182 HCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQN 241
C L ELR+FP DP E+ V+ G A+S GCR+L +LYFC+ MTN AV + +N
Sbjct: 383 TCKELRELRIFPFDP-REDSEGPVSGVGLQAISEGCRKLESILYFCQNMTNGAVTAMSEN 441
Query: 242 CPNFTHFRL 250
CP T FRL
Sbjct: 442 CPQLTVFRL 450
>AT2G39940.1 | Symbols: COI1 | COI1 (CORONATINE INSENSITIVE 1);
protein binding / ubiquitin-protein ligase |
chr2:16672848-16675486 REVERSE
Length = 592
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 10/246 (4%)
Query: 9 IQENGIDDKSGSWLSCFPENFSSLEILNFANLN-SEVNFDALERLVTRCKSLKVLKVNKN 67
++E+ +K G WL ++ +SLE+LNF ++++ LE + C+SL +KV +
Sbjct: 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-D 229
Query: 68 ISLDQLQRLLVGAPQLTELGTGSFSQELST-QQYTDLENAFSHCKNLDTLSGLWEAMALY 126
+ +L A L E GS ++++ ++Y +L C+ GL
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR-----LGLSYMGPNE 284
Query: 127 LPVLYPACTNLTFLNLSYAALQSLELDNLLRHCPQLRRLWVLDTVEDKGLEAVGSHCPLL 186
+P+L+P + L+L YA L++ + L++ CP L L + + D+GLE + +C L
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344
Query: 187 EELRV-FPADPFDEEIIHG-VTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNCPN 244
+ LR+ AD E G V++ G +A++ GC+ L Y+ + +TN ++ +I N
Sbjct: 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404
Query: 245 FTHFRL 250
FRL
Sbjct: 405 LCDFRL 410
>AT4G15475.1 | Symbols: | F-box family protein (FBL4) |
chr4:8845927-8848701 FORWARD
Length = 610
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 27/178 (15%)
Query: 77 LVGAPQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEAMALYLPVLYPACTN 136
L+ P ++ +G S +Q+ ++ + DL+ + + L + C
Sbjct: 147 LIWCPNVSSVGLCSLAQKCTSLKSLDLQGCYVGDQGLAAVGKF--------------CKQ 192
Query: 137 LTFLNLSYA-ALQSLELDNLLRHCPQ-LRRLWVLDT--VEDKGLEAVGSHCPLLEELRVF 192
L LNL + L + + +L+ C + L+ + V + + D LEAVGSHC LLE L
Sbjct: 193 LEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVLY-- 250
Query: 193 PADPFDEEIIHGVTEAGFVAVSYGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRL 250
D E IH + G +AV+ GC RL + C +T+ A A + + C + L
Sbjct: 251 ----LDSEYIH---DKGLIAVAQGCHRLKNLKLQCVSVTDVAFAAVGELCTSLERLAL 301
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 86/210 (40%), Gaps = 41/210 (19%)
Query: 44 VNFDALERLVTRCKSLKVLKVN--KNISLDQLQRLLVGAPQLTELGTGSFSQELSTQQYT 101
V+ LE + CK L+ +++N NI ++ + P+L EL
Sbjct: 333 VSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKEL--------------- 377
Query: 102 DLENAFSHCKNLDTLSGLWEAMALYLPVLYPACTNLTFLNL-SYAALQSLELDNLLRHCP 160
A +C+ + S L E + C +L L+L + + + + ++ + C
Sbjct: 378 ----ALLYCQRIGN-SALQE--------IGKGCKSLEILHLVDCSGIGDIAMCSIAKGCR 424
Query: 161 QLRRLWVLDTVE--DKGLEAVGSHCPLLEELRVFPADPFDEEIIHGVTEAGFVAVSYGCR 218
L++L + E +KG+ ++G HC L EL + D V +A+ GC
Sbjct: 425 NLKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDK--------VGNKALIAIGKGCS 476
Query: 219 RLHYVLYFCRQMTNAAVATIVQNCPNFTHF 248
+ C Q+++A + I + CP TH
Sbjct: 477 LQQLNVSGCNQISDAGITAIARGCPQLTHL 506
>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | SKP2B; ubiquitin-protein
ligase | chr1:28940888-28942401 FORWARD
Length = 360
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 27/188 (14%)
Query: 80 APQLTELGTGSFSQELSTQQYTDLENAFSHCKNLDTLSGLWEAMALYLPVLYP---ACTN 136
AP+ +L T Q+ + +E +HC L L L ++ + LY CTN
Sbjct: 86 APKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLD-LSKSSKITDHSLYSLARGCTN 144
Query: 137 LTFLNLS-YAALQSLELDNLLRHCPQLRRL---WVLDTVEDKGLEAVGSHCPLLEELRVF 192
LT LNLS + L +L R C +L+ L ++ V D L+A+G +C L+ L +
Sbjct: 145 LTKLNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLG 204
Query: 193 PADPFDEEIIHG------------------VTEAGFVAVSYGCRRLHYV-LYFCRQMTNA 233
+ ++ + +T+ VA++ C L + LY+CR +T+
Sbjct: 205 WCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNITDR 264
Query: 234 AVATIVQN 241
A+ ++ Q+
Sbjct: 265 AMYSLAQS 272