Jatropha Genome Database

JcCA0271431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0271431.10 + phase: 0 
         (216 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56360.1 | Symbols:  | unknown protein | chr3:20896641-208973...   159   1e-39
AT5G05250.1 | Symbols:  | unknown protein | chr5:1557116-1557835...   152   1e-37

>AT3G56360.1 | Symbols:  | unknown protein | chr3:20896641-20897342
           FORWARD
          Length = 233

 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 103/158 (65%), Gaps = 10/158 (6%)

Query: 67  ANAAVVYEKLDEWMKDSVVEIVKNLREAPLLVQVYDKGETTALKTEKAVEEETWSTVKEK 126
             + V  EKLD W++DSVVEIVKNLRE+PLL+ +Y +       T    + E W+ ++ K
Sbjct: 73  GGSVVSREKLDVWLRDSVVEIVKNLRESPLLMHLYAEANGGLTTTATNPKAEDWTEMEGK 132

Query: 127 WGKRETPLPEGVIFVEQLDEEDPEEIT----------TRAWGIVVQGKGVDCGPVCYLLK 176
           WG+ E   PEGVI VE+L + D  +            T AWGIV QG+G D GPVCYLLK
Sbjct: 133 WGRGEERTPEGVILVEKLADGDIADDDDHDGGACGEDTSAWGIVAQGRGSDTGPVCYLLK 192

Query: 177 TSRVGSGLGAFCTHFCLMKVKSFRESTRSQLKNFWLLE 214
           T+RV SG+G  CTHFCL+KVKSFRE+  SQL N WL++
Sbjct: 193 TTRVRSGMGTVCTHFCLVKVKSFRETAMSQLNNSWLVQ 230


>AT5G05250.1 | Symbols:  | unknown protein | chr5:1557116-1557835
           REVERSE
          Length = 239

 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/155 (54%), Positives = 106/155 (68%), Gaps = 19/155 (12%)

Query: 74  EKLDEWMKDSVVEIVKNLREAPLLVQVY--DKGETTALKTEKAVEEETWSTVKEKWGKRE 131
           EKLD WMK+SV EIVKNL EAPLLV +Y  DK E T +     ++ E W+ VK +W + E
Sbjct: 87  EKLDRWMKESVTEIVKNLSEAPLLVHLYTGDKEEGTVV----VMKAEEWAAVKGRWERGE 142

Query: 132 TPLPEGVIFVEQLDEEDPEEIT-------TRAWGIVVQGKGVDCGPVCYLLKTSRVGSGL 184
             +PEG++FVEQL   +            TRAWG+VVQG+GV+CGPVCYLLKT+RVGSG 
Sbjct: 143 AEMPEGIVFVEQLGAAEESCGCGFDGGDGTRAWGLVVQGRGVECGPVCYLLKTTRVGSGS 202

Query: 185 GAF------CTHFCLMKVKSFRESTRSQLKNFWLL 213
           G+       CTHFCL KV SFRE++ SQL+N WL+
Sbjct: 203 GSGSGLGMRCTHFCLAKVSSFRETSESQLRNCWLV 237