Jatropha Genome Database

JcCA0271341.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0271341.20 - phase: 2 /TE/partial
         (617 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   201   1e-51
ATMG00810.1 | Symbols: ORF240B | hypothetical protein | chrM:227...   154   1e-37
ATMG00240.1 | Symbols: ORF111A | hypothetical protein | chrM:689...    75   1e-13

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/218 (44%), Positives = 143/218 (65%), Gaps = 1/218 (0%)

Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQA-GVWKIVDLGQY 396
            L  E+ARS  GI I QRKY LDLL+ET +LGCK S  P++ +    A      VD   Y
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAY 378

Query: 397 QRLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHG 456
           +RL+GRL+YL  TR DI++A++ +SQ+   P  +H +AV +IL Y+K    +G+ +S   
Sbjct: 379 RRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQA 438

Query: 457 HLKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGV 516
            ++++ ++DA +    D RRST+GYC F+G +L++W+SKKQ VV++SSAEAEYR+++   
Sbjct: 439 EMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFAT 498

Query: 517 SEMLWVRKLIEDLKYSNSGTSILLCDNKAAISIAQNLV 554
            EM+W+ +   +L+   S  ++L CDN AAI IA N V
Sbjct: 499 DEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAV 536



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 32/43 (74%)

Query: 198 TPIKISLSCAVNLNWELHQFDVKNAFLHGDLEDDVYMDVPPRF 240
           T +K+ L+ +   N+ LHQ D+ NAFL+GDL++++YM +PP +
Sbjct: 174 TSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGY 216


>ATMG00810.1 | Symbols: ORF240B | hypothetical protein |
           chrM:227709-228431 REVERSE
          Length = 240

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 110/184 (59%)

Query: 338 ILSCEVARSNKGIFISQRKYVLDLLEETCMLGCKASDSPIEVNHRLQAGVWKIVDLGQYQ 397
            L  ++     G+F+SQ KY   +L    ML CK   +P+ +         K  D   ++
Sbjct: 42  FLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFR 101

Query: 398 RLVGRLIYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHGH 457
            +VG L YL+ TRPDI+YA+++V Q MH P  +  + + R+L Y+K     G+   K+  
Sbjct: 102 SIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSK 161

Query: 458 LKIEAYTDADWAGSLDDRRSTSGYCTFVGGNLVTWRSKKQNVVARSSAEAEYRSMALGVS 517
           L ++A+ D+DWAG    RRST+G+CTF+G N+++W +K+Q  V+RSS E EYR++AL  +
Sbjct: 162 LNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAA 221

Query: 518 EMLW 521
           E+ W
Sbjct: 222 ELTW 225


>ATMG00240.1 | Symbols: ORF111A | hypothetical protein |
           chrM:68918-69253 REVERSE
          Length = 111

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 55/82 (67%)

Query: 404 IYLSHTRPDIAYAISLVSQYMHGPHDSHLEAVFRILGYLKSAPRRGILFSKHGHLKIEAY 463
           +YL+ TRPD+ +A++ +SQ+      + ++AV+++L Y+K    +G+ +S    L+++A+
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 464 TDADWAGSLDDRRSTSGYCTFV 485
            D+DWA   D RRS +G+C+ V
Sbjct: 61  ADSDWASCPDTRRSVTGFCSLV 82