Jatropha Genome Database

JcCA0270701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270701.10 + phase: 2 /pseudo/partial
         (205 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66760.1 | Symbols: SDH1-1 | SDH1-1; ATP binding / succinate ...   308   1e-84
AT2G18450.1 | Symbols: SDH1-2 | SDH1-2; succinate dehydrogenase ...   295   9e-81
AT5G14760.1 | Symbols: AO | AO (L-ASPARTATE OXIDASE); L-aspartat...    91   4e-19

>AT5G66760.1 | Symbols: SDH1-1 | SDH1-1; ATP binding / succinate
           dehydrogenase | chr5:26653776-26657224 FORWARD
          Length = 634

 Score =  308 bits (789), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 146/153 (95%), Positives = 152/153 (99%)

Query: 51  MERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISET 110
           MERYAPTAKDLASRDVVSRSMTMEIREGRGVGP KDHIYLHLNHLPP+VLKERLPGISET
Sbjct: 316 MERYAPTAKDLASRDVVSRSMTMEIREGRGVGPHKDHIYLHLNHLPPEVLKERLPGISET 375

Query: 111 AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTVKGNDPDAVVPGLMAAGEAACAS 170
           AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVT+KG+DPDAV+PGLMAAGEAACAS
Sbjct: 376 AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTIKGDDPDAVIPGLMAAGEAACAS 435

Query: 171 VHGANRLGANSLLDIVVFGRACANRVAEINRPG 203
           VHGANRLGANSLLDIVVFGRACANRVAEI++PG
Sbjct: 436 VHGANRLGANSLLDIVVFGRACANRVAEISKPG 468


>AT2G18450.1 | Symbols: SDH1-2 | SDH1-2; succinate dehydrogenase |
           chr2:7997510-8000801 REVERSE
          Length = 632

 Score =  295 bits (756), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 137/153 (89%), Positives = 151/153 (98%)

Query: 51  MERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISET 110
           M+RYAPTA+DLASRDVVSRSMTMEIR+GRG GP+KD++YL+LNHLPP+VLKERLPGISET
Sbjct: 314 MDRYAPTARDLASRDVVSRSMTMEIRQGRGAGPMKDYLYLYLNHLPPEVLKERLPGISET 373

Query: 111 AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTVKGNDPDAVVPGLMAAGEAACAS 170
           AAIFAGVDVT+EPIPVLPTVHYNMGGIPTNYHGEV+T++G+DPDAVVPGLMAAGEAACAS
Sbjct: 374 AAIFAGVDVTREPIPVLPTVHYNMGGIPTNYHGEVITLRGDDPDAVVPGLMAAGEAACAS 433

Query: 171 VHGANRLGANSLLDIVVFGRACANRVAEINRPG 203
           VHGANRLGANSLLDIVVFGRACANRVAEI +PG
Sbjct: 434 VHGANRLGANSLLDIVVFGRACANRVAEIQKPG 466


>AT5G14760.1 | Symbols: AO | AO (L-ASPARTATE OXIDASE); L-aspartate
           oxidase/ electron carrier/ oxidoreductase |
           chr5:4769133-4772012 FORWARD
          Length = 651

 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 80/143 (55%), Gaps = 19/143 (13%)

Query: 51  MERYAPT---AKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGI 107
           MER+ P      +LA RDVV+RS+  ++++       + ++ L ++H P + +    P I
Sbjct: 352 MERFMPVYDERAELAPRDVVARSIDDQLKKRN-----EKYVLLDISHKPREKILAHFPNI 406

Query: 108 SETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVTVKGNDPDAVVPGLMAAGEAA 167
           + +  +  G+D+T++PIPV+P  HY  GG+     GE            V GL  AGE A
Sbjct: 407 A-SECLKHGLDITRQPIPVVPAAHYMCGGVRAGLQGETN----------VLGLFVAGEVA 455

Query: 168 CASVHGANRLGANSLLDIVVFGR 190
           C  +HGANRL +NSLL+ +VF R
Sbjct: 456 CTGLHGANRLASNSLLEALVFAR 478