Jatropha Genome Database
- JcCA0270361.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0270361.10 + phase: 2 /partial
(230 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53680.1 | Symbols: | PHD finger transcription factor, putat... 201 4e-52
AT2G37520.1 | Symbols: | PHD finger family protein | chr2:15745... 188 3e-48
AT5G59830.2 | Symbols: | unknown protein | chr5:24105423-241070... 159 1e-39
AT5G59830.1 | Symbols: | unknown protein | chr5:24105423-241070... 159 1e-39
AT5G13660.1 | Symbols: | unknown protein | chr5:4405094-4406983... 149 1e-36
AT5G13660.2 | Symbols: | unknown protein | chr5:4405094-4406983... 149 2e-36
AT2G36720.1 | Symbols: | PHD finger transcription factor, putat... 78 5e-15
AT2G27980.1 | Symbols: | protein binding / zinc ion binding | c... 68 5e-12
>AT3G53680.1 | Symbols: | PHD finger transcription factor, putative
| chr3:19892863-19897412 REVERSE
Length = 839
Score = 201 bits (510), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 136/215 (63%), Gaps = 28/215 (13%)
Query: 2 EIPKHASSSGIRKITFKFSKRKEDYDSQIAPSVAQPVGNEICQEQFYKKEYGKHYSACAE 61
EIPKH S++GI KITFK SKR ED+ C ++ + Y +
Sbjct: 122 EIPKHLSTTGITKITFKLSKRNEDF----------------CDLPMIQEHTWEGYPS--- 162
Query: 62 MLENTDRYFCAPNMELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLS--PGRELYGII 119
+ + +KM KK+ N+ +NVKKLL TGILDGARVKYLS REL GII
Sbjct: 163 -------NVASSTLGVKMLKKIDSTNFLSNVKKLLGTGILDGARVKYLSTSAARELQGII 215
Query: 120 EGGGYLCGCSLCNFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSA 179
GGYLCGC+ C+FSKVL A+EFE+HAG +T+HPNNHI+LENG+P+ ++IQEL+ AP
Sbjct: 216 HSGGYLCGCTACDFSKVLGAYEFERHAGGKTKHPNNHIYLENGRPVYNVIQELRIAPPDV 275
Query: 180 LGEVIKDVAGSSINGELFEIWKASFQQRNGMAGAD 214
L EVI+ VAGS+++ E F+ WK SFQQ M D
Sbjct: 276 LEEVIRKVAGSALSEEGFQAWKGSFQQDKNMTEDD 310
>AT2G37520.1 | Symbols: | PHD finger family protein |
chr2:15745033-15749615 REVERSE
Length = 854
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 133/208 (63%), Gaps = 36/208 (17%)
Query: 1 LEIPKHASSSGIRKITFKFSKRKEDYDSQIAPSVAQPVGNEICQEQFYKKEYGKHYSACA 60
LEIPKH SS+GI KITFK SK K+++D P +
Sbjct: 119 LEIPKHLSSTGITKITFKLSKPKKEFDD--LPLIK------------------------- 151
Query: 61 EMLENTDRYFCAPNMELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLS--PGRELYGI 118
D + A +++ KK+V +YP+NVKKLL TGIL+GARVKY+S P R+L GI
Sbjct: 152 ------DHTWDAGVVKMP-KKKIVSLSYPSNVKKLLETGILEGARVKYISTPPVRQLLGI 204
Query: 119 IEGGGYLCGCSLCNFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLS 178
I GGYLCGC+ CNFSKVLSA+EFE+HAG++TRHPNNHI LEN + + +I+QELKTAP
Sbjct: 205 IHSGGYLCGCTTCNFSKVLSAYEFEQHAGAKTRHPNNHIFLENRRAVYNIVQELKTAPRV 264
Query: 179 ALGEVIKDVAGSSINGELFEIWKASFQQ 206
L EVI++VAGS++N E WK QQ
Sbjct: 265 VLEEVIRNVAGSALNEEGLRAWKGDGQQ 292
>AT5G59830.2 | Symbols: | unknown protein | chr5:24105423-24107071
FORWARD
Length = 425
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 97/131 (74%), Gaps = 1/131 (0%)
Query: 76 ELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE-LYGIIEGGGYLCGCSLCNFS 134
E K SKK ++P+NV+ L+STG+LDG VKY+S RE L G+I+G GYLCGC C+F+
Sbjct: 278 EAKSSKKEASTSFPSNVRSLISTGMLDGVPVKYVSVSREELRGVIKGSGYLCGCQTCDFT 337
Query: 135 KVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSING 194
KVL+A+ FE+HAG +T+HPNNHI+ ENGK I I+QEL+ P S L +VI+ V GS IN
Sbjct: 338 KVLNAYAFERHAGCKTKHPNNHIYFENGKTIYQIVQELRNTPESILFDVIQTVFGSPINQ 397
Query: 195 ELFEIWKASFQ 205
+ F IWK SFQ
Sbjct: 398 KAFRIWKESFQ 408
>AT5G59830.1 | Symbols: | unknown protein | chr5:24105423-24107071
FORWARD
Length = 425
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 97/131 (74%), Gaps = 1/131 (0%)
Query: 76 ELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE-LYGIIEGGGYLCGCSLCNFS 134
E K SKK ++P+NV+ L+STG+LDG VKY+S RE L G+I+G GYLCGC C+F+
Sbjct: 278 EAKSSKKEASTSFPSNVRSLISTGMLDGVPVKYVSVSREELRGVIKGSGYLCGCQTCDFT 337
Query: 135 KVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSING 194
KVL+A+ FE+HAG +T+HPNNHI+ ENGK I I+QEL+ P S L +VI+ V GS IN
Sbjct: 338 KVLNAYAFERHAGCKTKHPNNHIYFENGKTIYQIVQELRNTPESILFDVIQTVFGSPINQ 397
Query: 195 ELFEIWKASFQ 205
+ F IWK SFQ
Sbjct: 398 KAFRIWKESFQ 408
>AT5G13660.1 | Symbols: | unknown protein | chr5:4405094-4406983
FORWARD
Length = 536
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 91/132 (68%), Gaps = 2/132 (1%)
Query: 76 ELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE--LYGIIEGGGYLCGCSLCNF 133
+ K +KK N +P+NVK LLSTGI DG VKY S RE L G+I+G GYLCGC C
Sbjct: 386 DTKTAKKGSTNTFPSNVKSLLSTGIFDGVTVKYYSWSRERNLKGMIKGTGYLCGCGNCKL 445
Query: 134 SKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSIN 193
+KVL+A+EFE+HA +T+HPNNHI+ ENGK I ++QELK P L + I++V GS IN
Sbjct: 446 NKVLNAYEFEQHANCKTKHPNNHIYFENGKTIYGVVQELKNTPQEKLFDAIQNVTGSDIN 505
Query: 194 GELFEIWKASFQ 205
+ F WKAS+
Sbjct: 506 HKNFNTWKASYH 517
>AT5G13660.2 | Symbols: | unknown protein | chr5:4405094-4406983
FORWARD
Length = 537
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 76 ELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE---LYGIIEGGGYLCGCSLCN 132
+ K +KK N +P+NVK LLSTGI DG VKY S RE L G+I+G GYLCGC C
Sbjct: 386 DTKTAKKGSTNTFPSNVKSLLSTGIFDGVTVKYYSWSREQRNLKGMIKGTGYLCGCGNCK 445
Query: 133 FSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSI 192
+KVL+A+EFE+HA +T+HPNNHI+ ENGK I ++QELK P L + I++V GS I
Sbjct: 446 LNKVLNAYEFEQHANCKTKHPNNHIYFENGKTIYGVVQELKNTPQEKLFDAIQNVTGSDI 505
Query: 193 NGELFEIWKASFQ 205
N + F WKAS+
Sbjct: 506 NHKNFNTWKASYH 518
>AT2G36720.1 | Symbols: | PHD finger transcription factor, putative
| chr2:15393447-15399189 FORWARD
Length = 1007
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 81 KKVVPNNYPTNVKKLLSTGILDGARVKYL----SPGRELYGIIEGGGYLCGCSLCNFSKV 136
K ++ + P V+ L TG+LDG V Y+ S L GII GG LC CS C+++ V
Sbjct: 253 KSILIRSRPETVRDLFETGLLDGLSVVYMGTVKSQAFPLRGIIRDGGILCSCSSCDWANV 312
Query: 137 LSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVA 188
+S +FE HA + R + +I ENGK + ++ + PL AL I D
Sbjct: 313 ISTSKFEIHACKQYRRASQYICFENGKSLLDVLNISRNTPLHALEATILDAV 364
>AT2G27980.1 | Symbols: | protein binding / zinc ion binding |
chr2:11913950-11919741 REVERSE
Length = 1057
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 87 NYPTNVKKLLSTGILDGARVKYL-------SPGRELYGIIEGGGYLCGCSLCNFSKVLSA 139
N+P +K + GIL+G V Y+ + R L G+I+G G LC CS C +V+S
Sbjct: 376 NFPAKLKDIFDCGILEGLIVYYVRGAKVREAGTRGLKGVIKGSGVLCFCSACIGIQVVSP 435
Query: 140 HEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAG 189
FE HA S + P +I LE+G + ++ K PL+ L E ++ V G
Sbjct: 436 AMFELHASSNNKRPPEYILLESGFTLRDVMNACKENPLATLEEKLRVVVG 485