Jatropha Genome Database

JcCA0269931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269931.10 - phase: 0 /pseudo
         (263 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20960.1 | Symbols:  | cytidine/deoxycytidylate deaminase fam...   286   1e-77
AT3G47390.1 | Symbols:  | cytidine/deoxycytidylate deaminase fam...    91   8e-19
AT1G68720.1 | Symbols: TADA | TADA (TRNA ARGININE ADENOSINE DEAM...    50   2e-06

>AT4G20960.1 | Symbols:  | cytidine/deoxycytidylate deaminase family
           protein | chr4:11212077-11213530 FORWARD
          Length = 426

 Score =  286 bits (731), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 127/151 (84%), Positives = 143/151 (94%)

Query: 85  DDGFYIRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGD 144
           DD FY+R+CVELA++AIGCTSPNPMVGCVIVKDG IVG+GFHPKAGQPHAEVFALRDAG+
Sbjct: 73  DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 132

Query: 145 LAENATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVDPNPIVASSGLDRLRDAGID 204
           LAENATAYVSLEPCNHYGRTPPCTEALIKAK+R+VVIGMVDPNPIV SSG+ RL+DAGID
Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 192

Query: 205 VTFGIEEELCKRLNEAYIHQMLTGKPFVTLR 235
           VT  +EEELCK++NE +IH+MLTGKPF+ LR
Sbjct: 193 VTVSVEEELCKKMNEGFIHRMLTGKPFLALR 223


>AT3G47390.1 | Symbols:  | cytidine/deoxycytidylate deaminase family
           protein | chr3:17462094-17464655 FORWARD
          Length = 599

 Score = 90.9 bits (224), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 6/190 (3%)

Query: 59  IGLRIYCGSVMVKCQILAKDGSNE---GKDDGFYIRRCVELARKAIGCTSPNPMVGCVI- 114
           +  RI   S ++ C+    +G N       D  +IRR  +L+  + G TSP+P  GCVI 
Sbjct: 3   LSFRISSSSPLI-CRATLSNGDNSRNYHTTDAAFIRRAADLSEMSAGLTSPHPNFGCVIA 61

Query: 115 VKDGKIVGEGFHPKAGQPHAEVFALRDAGDLAENATAYVSLEPCNHYGRTPPCTEALIKA 174
              GK+ GEG+    G   AE  A+  AG+ +  ATAY+++EP + +G     + AL++A
Sbjct: 62  TSSGKVAGEGYLYAQGTKPAEALAVEAAGEFSRGATAYLNMEPGDCHGDHTAVS-ALVQA 120

Query: 175 KIRKVVIGMVDPNPIVASSGLDRLRDAGIDVTFGIEEELCKRLNEAYIHQMLTGKPFVTL 234
            I +VV+G+  P   +  S +  LR  GI+V    E+   K L +A    +L   P +  
Sbjct: 121 GIERVVVGIRHPLQHLRGSAIRELRSHGIEVNVLGEDFESKVLEDARKSCLLVNAPLIHR 180

Query: 235 R*QQYPYLII 244
              + P+ ++
Sbjct: 181 ACSRVPFSVL 190


>AT1G68720.1 | Symbols: TADA | TADA (TRNA ARGININE ADENOSINE
            DEAMINASE); catalytic/ hydrolase/ zinc ion binding |
            chr1:25804547-25808820 FORWARD
          Length = 1307

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 19/118 (16%)

Query: 86   DGFYIRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFH----PKAGQPHAEVFALRD 141
            D  ++R  +  A+KA   T   P VG V+V DGKI+  G++     +    HAE+  +R+
Sbjct: 1110 DEIFMREALVEAKKAAD-TWEVP-VGAVLVHDGKIIARGYNLVEELRDSTAHAEMICIRE 1167

Query: 142  AGDLAE-----NATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVDPNPIVASSG 194
                       + T YV+LEPC      P C  A+++A++  +V G   PN ++ + G
Sbjct: 1168 GSKALRSWRLADTTLYVTLEPC------PMCAGAILQARVNTLVWGA--PNKLLGADG 1217