Jatropha Genome Database

JcCA0269921.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269921.20 + phase: 0 /pseudo
         (140 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58640.1 | Symbols:  | selenoprotein-related | chr5:23697996-...    94   3e-20
AT5G58640.2 | Symbols:  | selenoprotein-related | chr5:23697996-...    94   3e-20
AT3G47300.1 | Symbols: SELT | SELT (SELT-LIKE PROTEIN PRECURSOR)...    84   3e-17

>AT5G58640.1 | Symbols:  | selenoprotein-related |
           chr5:23697996-23699505 FORWARD
          Length = 228

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 54/69 (78%), Gaps = 2/69 (2%)

Query: 59  VTPETLDVAPQEQ--VTGDIGVGNTVKIDFCSSCSYRGTAVTMKKMLETQFPGIHVMLAN 116
           + PETLD   Q+   + G IG GNTV+I+FC SCSY+GTAVTMKKMLET FPG+ V+LAN
Sbjct: 51  IIPETLDFPSQKTSGLGGAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILAN 110

Query: 117 YPPPLPXRV 125
           YPPP P R+
Sbjct: 111 YPPPAPKRL 119


>AT5G58640.2 | Symbols:  | selenoprotein-related |
           chr5:23697996-23699505 FORWARD
          Length = 227

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 59  VTPETLDVAPQEQ-VTGDIGVGNTVKIDFCSSCSYRGTAVTMKKMLETQFPGIHVMLANY 117
           + PETLD   Q   + G IG GNTV+I+FC SCSY+GTAVTMKKMLET FPG+ V+LANY
Sbjct: 51  IIPETLDFPSQTSGLGGAIGYGNTVEINFCVSCSYKGTAVTMKKMLETAFPGLDVILANY 110

Query: 118 PPPLPXRV 125
           PPP P R+
Sbjct: 111 PPPAPKRL 118


>AT3G47300.1 | Symbols: SELT | SELT (SELT-LIKE PROTEIN PRECURSOR);
           selenium binding | chr3:17428685-17429555 REVERSE
          Length = 209

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 52/64 (81%), Gaps = 2/64 (3%)

Query: 62  ETLDVAPQEQVTGDIGVGNTVKIDFCSSCSYRGTAVTMKKMLETQFPGIHVMLANYPPPL 121
           ETLD  P ++ TG +G GNTV+I+FC SCSY+GTAV+MKKMLE+ FPG+ V+LANYP P 
Sbjct: 41  ETLDF-PAQKSTG-VGYGNTVEINFCISCSYKGTAVSMKKMLESVFPGLDVVLANYPAPA 98

Query: 122 PXRV 125
           P R+
Sbjct: 99  PKRI 102