Jatropha Genome Database
- JcCA0269921.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0269921.10 - phase: 2 /pseudo/partial
(376 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G29980.1 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3); om... 436 e-122
AT5G05580.1 | Symbols: FAD8 | FAD8 (FATTY ACID DESATURASE 8); om... 436 e-122
AT3G11170.1 | Symbols: FAD7, FADD | FAD7 (FATTY ACID DESATURASE ... 435 e-122
AT2G29980.2 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3); om... 259 1e-69
AT3G12120.2 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2); de... 140 9e-34
AT3G12120.1 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2); de... 140 9e-34
AT4G30950.1 | Symbols: FAD6, FADC, SFD4 | FAD6 (FATTY ACID DESAT... 70 3e-12
>AT2G29980.1 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3);
omega-3 fatty acid desaturase | chr2:12781787-12784946
REVERSE
Length = 386
Score = 436 bits (1121), Expect = e-122, Method: Compositional matrix adjust.
Identities = 203/268 (75%), Positives = 232/268 (86%)
Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
N++VGH LHS ILVPYHGWRISHRTHHQ HG+VE DESWVPLPE++YK+L STR++R+T
Sbjct: 115 NSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLRYT 174
Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
+PLPMLAYP YL RSPGKEGSHFNPYS+LFAP ERK + TST CWS+M + L F+F
Sbjct: 175 VPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVF 234
Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFF 286
GP+ VLK YG+PY IFVMWLD VTYLHHHGHD+KLPWYRGKEWSYLRGGLTT+DRDYG F
Sbjct: 235 GPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIF 294
Query: 287 NNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFHLFESLLRSI 346
NNIHHDIGTHVIHHLFPQIPHYHL++ATKAAK VLG+YYREPK SGA P HL ESL+ SI
Sbjct: 295 NNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPIHLVESLVASI 354
Query: 347 REDHYVSDIGEIVYYQTDPELYRIPKSK 374
++DHYVSD G+IV+Y+TDP+LY K
Sbjct: 355 KKDHYVSDTGDIVFYETDPDLYVYASDK 382
>AT5G05580.1 | Symbols: FAD8 | FAD8 (FATTY ACID DESATURASE 8);
omega-3 fatty acid desaturase | chr5:1664331-1666345
FORWARD
Length = 435
Score = 436 bits (1121), Expect = e-122, Method: Compositional matrix adjust.
Identities = 196/261 (75%), Positives = 229/261 (87%)
Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
N++ GH LHSSILVPYHGWRISHRTHHQ HG+VE DESW PLPE IYK L+ +T++ RFT
Sbjct: 170 NSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEKTTQMFRFT 229
Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
+P PMLAYPFYLW+RSPGK+GSH++P S+LF P E+K VLTST CW+ MA LL C F+
Sbjct: 230 LPFPMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVLTSTACWTAMAALLVCLNFVM 289
Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFF 286
GP+Q+LK YGIPYWIFVMWLDFVTYLHHHGH+ KLPWYRGKEWSYLRGGLTT+DRDYG+
Sbjct: 290 GPIQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWI 349
Query: 287 NNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFHLFESLLRSI 346
NNIHHDIGTHVIHHLFPQIPHYHL+EAT+AAKPVLGKYYREPK SG P HL SL++S+
Sbjct: 350 NNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPKNSGPLPLHLLGSLIKSM 409
Query: 347 REDHYVSDIGEIVYYQTDPEL 367
++DH+VSD G++VYY+ DP+L
Sbjct: 410 KQDHFVSDTGDVVYYEADPKL 430
>AT3G11170.1 | Symbols: FAD7, FADD | FAD7 (FATTY ACID DESATURASE 7);
omega-3 fatty acid desaturase | chr3:3499959-3502126
FORWARD
Length = 446
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/262 (77%), Positives = 223/262 (85%)
Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
N++VGH LHSSILVPYHGWRISHRTHHQ HG+VE DESW P+ EKIY LD TR RFT
Sbjct: 177 NSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYNTLDKPTRFFRFT 236
Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
+PL MLAYPFYLW+RSPGK+GSH++P S+LF P ERK VLTST CW+ MA LL C F
Sbjct: 237 LPLVMLAYPFYLWARSPGKKGSHYHPDSDLFLPKERKDVLTSTACWTAMAALLVCLNFTI 296
Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFF 286
GP+Q+LK YGIPYWI VMWLDFVTYLHHHGH+ KLPWYRGKEWSYLRGGLTT+DRDYG
Sbjct: 297 GPIQMLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLI 356
Query: 287 NNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKYYREPKKSGAFPFHLFESLLRSI 346
NNIHHDIGTHVIHHLFPQIPHYHL+EAT+AAKPVLGKYYREP KSG P HL E L +SI
Sbjct: 357 NNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPDKSGPLPLHLLEILAKSI 416
Query: 347 REDHYVSDIGEIVYYQTDPELY 368
+EDHYVSD GE+VYY+ DP LY
Sbjct: 417 KEDHYVSDEGEVVYYKADPNLY 438
>AT2G29980.2 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3);
omega-3 fatty acid desaturase | chr2:12782257-12784946
REVERSE
Length = 288
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 120/161 (74%), Positives = 138/161 (85%)
Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
N++VGH LHS ILVPYHGWRISHRTHHQ HG+VE DESWVPLPE++YK+L STR++R+T
Sbjct: 115 NSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLRYT 174
Query: 167 IPLPMLAYPFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIF 226
+PLPMLAYP YL RSPGKEGSHFNPYS+LFAP ERK + TST CWS+M + L F+F
Sbjct: 175 VPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVF 234
Query: 227 GPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGK 267
GP+ VLK YG+PY IFVMWLD VTYLHHHGHD+KLPWYRGK
Sbjct: 235 GPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGK 275
>AT3G12120.2 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2);
delta12-fatty acid dehydrogenase/ omega-6 fatty acid
desaturase | chr3:3860592-3861743 REVERSE
Length = 383
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 128/257 (49%), Gaps = 17/257 (6%)
Query: 84 CSGLSLFLAMIVAME----VFLIIHC*NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNV 139
C G L ++A E F ++ VG HS +LVPY W+ SHR HH G++
Sbjct: 92 CQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSL 151
Query: 140 EKDESWVPLPEKIYKEL-----DLSTRIMRFTIPLPMLAYPFYLWSRSPGKE----GSHF 190
E+DE +VP + K + RIM T+ +L +P YL G+ HF
Sbjct: 152 ERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQF-VLGWPLYLAFNVSGRPYDGFACHF 210
Query: 191 NPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIFGPVQVLKFYGIPYWIFVMWLDFVT 250
P + ++ ER + S + L+ G ++ YG+P I +L +T
Sbjct: 211 FPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLIT 270
Query: 251 YLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFFNNIHHDI-GTHVIHHLFPQIPHYH 309
YL H LP Y EW +LRG L TVDRDYG N + H+I THV HHLF +PHY+
Sbjct: 271 YLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYN 328
Query: 310 LIEATKAAKPVLGKYYR 326
+EATKA KP+LG YY+
Sbjct: 329 AMEATKAIKPILGDYYQ 345
>AT3G12120.1 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2);
delta12-fatty acid dehydrogenase/ omega-6 fatty acid
desaturase | chr3:3860592-3861743 REVERSE
Length = 383
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 128/257 (49%), Gaps = 17/257 (6%)
Query: 84 CSGLSLFLAMIVAME----VFLIIHC*NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNV 139
C G L ++A E F ++ VG HS +LVPY W+ SHR HH G++
Sbjct: 92 CQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSL 151
Query: 140 EKDESWVPLPEKIYKEL-----DLSTRIMRFTIPLPMLAYPFYLWSRSPGKE----GSHF 190
E+DE +VP + K + RIM T+ +L +P YL G+ HF
Sbjct: 152 ERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQF-VLGWPLYLAFNVSGRPYDGFACHF 210
Query: 191 NPYSNLFAPHERKAVLTSTLCWSVMALLLFCSCFIFGPVQVLKFYGIPYWIFVMWLDFVT 250
P + ++ ER + S + L+ G ++ YG+P I +L +T
Sbjct: 211 FPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLIT 270
Query: 251 YLHHHGHDQKLPWYRGKEWSYLRGGLTTVDRDYGFFNNIHHDI-GTHVIHHLFPQIPHYH 309
YL H LP Y EW +LRG L TVDRDYG N + H+I THV HHLF +PHY+
Sbjct: 271 YLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYN 328
Query: 310 LIEATKAAKPVLGKYYR 326
+EATKA KP+LG YY+
Sbjct: 329 AMEATKAIKPILGDYYQ 345
>AT4G30950.1 | Symbols: FAD6, FADC, SFD4 | FAD6 (FATTY ACID
DESATURASE 6); omega-6 fatty acid desaturase |
chr4:15057278-15059673 REVERSE
Length = 448
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 15/222 (6%)
Query: 107 NNIVGHFLHSSILVPYHGWRISHRTHHQYHGNVEKDESWVPLPEKIYKELDLSTRIMRFT 166
+IVG ++ PY WR H HH + D +W P+P + ++ S+ +MR
Sbjct: 185 EDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEFE----SSPVMRKA 240
Query: 167 IPLPMLAY-PFYLWSRSPGKEGSHFNPYSNLFAPHERKAVLTSTLC-WSVMALLLFCSCF 224
I + Y P W HFN F E V S C ++ MA+ +
Sbjct: 241 I---IFGYGPIRPWLSIAHWVNWHFN--LKKFRASEVNRVKISLACVFAFMAVGWPLIVY 295
Query: 225 IFGPVQVLKFYGIPYWIFVMWLDFVTYLHHHGHDQKLPWYRGKEWSYLRGGLT-TVDRDY 283
G + +KF+ +P+ + W+ T +HH +P+ EW+ + L TV DY
Sbjct: 296 KVGILGWVKFWLMPWLGYHFWMSTFTMVHHTA--PHIPFKPADEWNAAQAQLNGTVHCDY 353
Query: 284 -GFFNNIHHDIGTHVIHHLFPQIPHYHLIEATKAAKPVLGKY 324
+ + HDI H+ HH+ P+IP Y+L A ++ + GKY
Sbjct: 354 PSWIEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKY 395