Jatropha Genome Database
- JcCA0268211.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0268211.10 - phase: 0
(395 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12560.2 | Symbols: | F-box family protein | chr4:7441815-74... 92 6e-19
AT4G12560.1 | Symbols: | F-box family protein | chr4:7441815-74... 92 6e-19
AT3G07870.1 | Symbols: | F-box family protein | chr3:2510871-25... 87 2e-17
AT4G22390.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 81 1e-15
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 77 2e-14
AT5G15660.1 | Symbols: | F-box family protein | chr5:5095652-50... 62 9e-10
AT3G23960.1 | Symbols: | F-box family protein | chr3:8657736-86... 61 1e-09
AT1G46984.1 | Symbols: | F-box protein-related | chr1:17274722-... 60 3e-09
AT3G10430.1 | Symbols: | F-box family protein | chr3:3242750-32... 59 5e-09
AT1G53550.1 | Symbols: | F-box family protein | chr1:19983411-1... 59 6e-09
AT1G53360.1 | Symbols: | F-box family protein-related | chr1:19... 58 8e-09
AT4G21240.1 | Symbols: | F-box family protein | chr4:11322411-1... 58 8e-09
AT1G19160.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 58 1e-08
AT2G31470.1 | Symbols: | F-box family protein | chr2:13407492-1... 58 1e-08
AT3G23880.1 | Symbols: | F-box family protein | chr3:8622061-86... 57 2e-08
AT1G55070.1 | Symbols: | F-box family protein | chr1:20551452-2... 56 4e-08
AT3G57590.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 56 5e-08
AT1G11620.1 | Symbols: | F-box family protein | chr1:3910833-39... 56 5e-08
AT1G53790.2 | Symbols: | F-box family protein | chr1:20079558-2... 55 6e-08
AT1G53790.1 | Symbols: | F-box family protein | chr1:20079694-2... 55 6e-08
AT2G43260.1 | Symbols: | F-box family protein / S locus-related... 55 7e-08
AT3G08750.1 | Symbols: | F-box family protein | chr3:2656716-26... 54 1e-07
AT1G32420.1 | Symbols: | F-box family protein | chr1:11701995-1... 52 5e-07
AT1G47810.1 | Symbols: | F-box family protein | chr1:17603504-1... 52 1e-06
AT4G09190.1 | Symbols: | F-box family protein | chr4:5855176-58... 51 1e-06
AT3G23260.1 | Symbols: | F-box family protein | chr3:8313334-83... 51 1e-06
AT1G47340.1 | Symbols: | F-box family protein | chr1:17354123-1... 50 3e-06
AT2G16450.1 | Symbols: | F-box family protein | chr2:7131520-71... 49 7e-06
AT4G04690.1 | Symbols: | F-box family protein (FBX15) | chr4:23... 48 9e-06
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-68... 48 1e-05
>AT4G12560.2 | Symbols: | F-box family protein |
chr4:7441815-7443157 FORWARD
Length = 413
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 149/339 (43%), Gaps = 42/339 (12%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSFSRTFQLFEFQHENDAA 94
P K++++CR + K +I ++P F E+HL R H +L+ ++ +
Sbjct: 17 PAKTLVRCRALSKPCYHLI-NDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLDS 75
Query: 95 FSIPIKFNIKRSN-LFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLD---- 149
S ++ +KR V S +G + L + + + NP T + LP +D
Sbjct: 76 VS-DVEHPMKRGGPTEVFGSSNGLIGLSNSP---TDLAVFNPSTRQIHRLPPSSIDLPDG 131
Query: 150 KRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHD-NVAVVTELYTLGDESWRRISDA 208
G V G GY S+S YKVVR V+ KI + +E + ++++L SW+RI
Sbjct: 132 SSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESV 191
Query: 209 PK-------FEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVV 261
F Y + GV HW+ R+ G +V FD E+F +V
Sbjct: 192 ASSIQLLFYFYYHLLYR---RGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIV 248
Query: 262 LLAPSCRPKFTAMLN---EVVVGVLGVCLFI----NDSEFGLWVMKDYGVQESWTRL--- 311
P+ A N ++ +GVL CL + + S +W+MK+Y V++SWT++
Sbjct: 249 RF-----PEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV 303
Query: 312 ----SCSSHNMHFLPIKYLRDGKKIMLGSYTKMGFRWYD 346
S S + + P+ Y +D KK++L W+D
Sbjct: 304 QKPKSVKSFS-YMRPLVYSKDKKKVLL-ELNNTKLVWFD 340
>AT4G12560.1 | Symbols: | F-box family protein |
chr4:7441815-7443157 FORWARD
Length = 413
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 149/339 (43%), Gaps = 42/339 (12%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSFSRTFQLFEFQHENDAA 94
P K++++CR + K +I ++P F E+HL R H +L+ ++ +
Sbjct: 17 PAKTLVRCRALSKPCYHLI-NDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLDS 75
Query: 95 FSIPIKFNIKRSN-LFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLD---- 149
S ++ +KR V S +G + L + + + NP T + LP +D
Sbjct: 76 VS-DVEHPMKRGGPTEVFGSSNGLIGLSNSP---TDLAVFNPSTRQIHRLPPSSIDLPDG 131
Query: 150 KRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHD-NVAVVTELYTLGDESWRRISDA 208
G V G GY S+S YKVVR V+ KI + +E + ++++L SW+RI
Sbjct: 132 SSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESV 191
Query: 209 PK-------FEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVV 261
F Y + GV HW+ R+ G +V FD E+F +V
Sbjct: 192 ASSIQLLFYFYYHLLYR---RGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIV 248
Query: 262 LLAPSCRPKFTAMLN---EVVVGVLGVCLFI----NDSEFGLWVMKDYGVQESWTRL--- 311
P+ A N ++ +GVL CL + + S +W+MK+Y V++SWT++
Sbjct: 249 RF-----PEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTV 303
Query: 312 ----SCSSHNMHFLPIKYLRDGKKIMLGSYTKMGFRWYD 346
S S + + P+ Y +D KK++L W+D
Sbjct: 304 QKPKSVKSFS-YMRPLVYSKDKKKVLL-ELNNTKLVWFD 340
>AT3G07870.1 | Symbols: | F-box family protein |
chr3:2510871-2512124 FORWARD
Length = 417
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 131/301 (43%), Gaps = 42/301 (13%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRS-PVQFLHQSGSFSRTFQLFEFQHEND- 92
P+ SI + VC++ R+++T + + + + S + P LH + E
Sbjct: 41 PISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDSPIRNGLHFLDLSEEEKR 100
Query: 93 -AAFSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLDKR 151
++F V+ SC+G LCL D S + + + + NP T + LPE +K
Sbjct: 101 IKTKKFTLRFASSMPEFDVVGSCNGLLCLSD-SLYNDSLYLYNPFTTNSLELPECS-NKY 158
Query: 152 IEGVVVSGFGYSSISKQYKVVRWV---------------RRKIAAREEHDNVAVVTELYT 196
+ +V GFG+ ++K+YKV++ V R +I ++ + ++ T
Sbjct: 159 HDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTT 218
Query: 197 LGDESWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISY-RKCGSYRSYYMVSFDFES 255
SWR + AP F ++ +NG H+++ R+ R + VSFD E
Sbjct: 219 DQSLSWRSLGKAP-------YKFVKRSSEALVNGRLHFVTRPRRHVPDRKF--VSFDLED 269
Query: 256 EKFNVVLLAPSCRPKFTAMLNEV------VVGVLGVCLFINDSEFGLWVMKDYGVQESWT 309
E+F + P C LN + G L ++ N + +WVMK YGV+ESW
Sbjct: 270 EEFKEIP-KPDC-----GGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESWG 323
Query: 310 R 310
+
Sbjct: 324 K 324
>AT4G22390.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
F-box associated type 1 (InterPro:IPR017451); BEST
Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT4G12560.2); Has 662 Blast hits to 662
proteins in 37 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 662; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr4:11813757-11815074 REVERSE
Length = 402
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 148/333 (44%), Gaps = 39/333 (11%)
Query: 38 SIIQCRRVCKTLRTIITSNPQFAENHLSR-----SPVQFLHQSGSFSRTFQLFEFQHEND 92
++++CR + K ++I S P+F +HL R + L + RT +L ++ +D
Sbjct: 20 TLVKCRVLSKPCFSLIDS-PEFVSSHLRRRLETGEHLMILLRGPRLLRTVELDSPENVSD 78
Query: 93 AAFSIPIKFNIKRSNLF--VLSSCDGFLCLGDRSRFYNP-VKMCNPVTGEYINLPEKGLD 149
+ + F V+ C+ + L +NP + + + E I+ PE+ +
Sbjct: 79 IPHPLQAGGFTEVFGSFNGVIGLCNSPVDLA----IFNPSTRKIHRLPIEPIDFPERDIT 134
Query: 150 KRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWRRISDAP 209
+ V G GY S+ +KVVR V+ K+ ++ V ++++L SW+R+
Sbjct: 135 RE---YVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRV--CL 189
Query: 210 KFEYDI------FMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVVLL 263
FE+ I + P GV +N HWI R+ G ++ +D S+ V+
Sbjct: 190 MFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSF 249
Query: 264 APSCRPKFTAMLNEVVVGVLG--VCLFIND--SEFGLWVMKDYGVQESWTRL-----SCS 314
P+ + + + +GVL VCL D S +WV+K+Y +SWT+L S
Sbjct: 250 -----PQELYIEDNMDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPES 304
Query: 315 SHNMHFL-PIKYLRDGKKIMLGSYTKMGFRWYD 346
++ F+ P+ +D KI+L W+D
Sbjct: 305 VESVEFIRPLICSKDRSKILLEINNAANLMWFD 337
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD
Length = 427
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 120/248 (48%), Gaps = 28/248 (11%)
Query: 97 IPIKFNIK---RSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPE----KGLD 149
+ +K N K R+ + ++ S +G +C+ S V + NP TG+ LPE K ++
Sbjct: 149 VMLKLNAKSYRRNWVEIVGSSNGLVCI---SPGEGAVFLYNPTTGDSKRLPENFRPKSVE 205
Query: 150 KRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWRRISDAP 209
+ GFG+ ++ YK+V+ V A E+ + +V Y+L +SWRRI +
Sbjct: 206 YERDNFQTYGFGFDGLTDDYKLVKLV----ATSEDILDASV----YSLKADSWRRICNL- 256
Query: 210 KFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVVLL---APS 266
+E+ N S +GV NG HW+ + R +V+FD ++E+F + + A
Sbjct: 257 NYEH----NDGSYTSGVHFNGAIHWVFTESRHNQR--VVVAFDIQTEEFREMPVPDEAED 310
Query: 267 CRPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGVQESWTRLSCSSHNMHFLPIKYL 326
C +F+ + + G L V D +WVM +YG +SW+R+ + P+
Sbjct: 311 CSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRINLLYRSMKPLCST 370
Query: 327 RDGKKIML 334
++ ++++L
Sbjct: 371 KNDEEVLL 378
>AT5G15660.1 | Symbols: | F-box family protein |
chr5:5095652-5097041 FORWARD
Length = 438
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 25/215 (11%)
Query: 101 FNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLDKRIEGVVVSGF 160
F R + +G + +G + + NP TG++I LP +++ V+S F
Sbjct: 113 FTYPRHEEYYYHHVNGLISVG----YGTDQIVINPTTGKFITLPRPKTRRKL---VISFF 165
Query: 161 GYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLG--DESWRRISDAPKFEYDIFMN 218
GY S+S QYKV+ R EE + ++YTLG +SW+ I+ + +
Sbjct: 166 GYDSVSDQYKVLCMTERLRGHPEE---ASSQHQVYTLGAKQKSWKMINCS-------IPH 215
Query: 219 FPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVVLLAPSCRPKFTAMLNEV 278
P S N V +NG+ ++I+ G +R M FD +S+ ++ + P T++ +
Sbjct: 216 RPWSWNAVCINGVVYYIAKTGEGMFRRCLM-RFDLKSDNLDLCTILPE--EIQTSLHDYF 272
Query: 279 VVGVLGVCLFINDSEF---GLWVMKDYGVQESWTR 310
++ G N F +WVM G + W +
Sbjct: 273 LINYKGKVAIPNQPNFYTYDVWVMNQEGGKIEWLK 307
>AT3G23960.1 | Symbols: | F-box family protein |
chr3:8657736-8658944 FORWARD
Length = 402
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 123/295 (41%), Gaps = 32/295 (10%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPV--QFLHQSGSFSRTFQLFEFQHEND 92
PVKSI CR V K T + F E L++S Q L + + F Q +N
Sbjct: 44 PVKSIATCRSVSK-FWTYVLGRQDFTELFLTKSSSRPQLLFACANDNGYFFFSSNQPQNL 102
Query: 93 AAFSIPIK----FNIKRSN-----LFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINL 143
S PI ++ +S + L S G L R R + + NP TGE + L
Sbjct: 103 DENSSPIAAYPLTHVPKSRDLGPPINGLVSLRGERILKGRIRPVDVSIIYNPSTGESLTL 162
Query: 144 PEKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWR 203
P+ + ++ V S GY I KQYKV+ + + + V+T G SWR
Sbjct: 163 PKTNMTRKKIYTVTSFLGYDPIEKQYKVLS-MNMSYEKHPKCEGYQVLT--LGTGKLSWR 219
Query: 204 RISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVVLL 263
I +++ P + + +NG+ ++++ S+ + +V FD SE FN + +
Sbjct: 220 MIKCCLNYQH------PLKNSEICINGVLYYLAMVNGSSWPTRAVVCFDIRSEMFNFMEV 273
Query: 264 APSCRPKFTAMLNEVVVGVLGVCLFINDSE--------FGLWVMKDYGVQESWTR 310
+T L G LG+ + + F LWV++D V+ W++
Sbjct: 274 YREL--SYTTTLINYNNGKLGMLMGQEAHKTISGICRSFELWVLED-TVKHEWSK 325
>AT1G46984.1 | Symbols: | F-box protein-related |
chr1:17274722-17275834 FORWARD
Length = 370
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 133/298 (44%), Gaps = 50/298 (16%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSP----VQFLHQSGSFSRTFQLFEFQHE 90
P+ SI CR V K +I+ S+ F E+ L +SP + F + GS F + ++
Sbjct: 37 PMNSIAICRLVSKQWASILQSS-DFTESFLIKSPPRPRLLFTIRYGSKWHLFSAPQPRNF 95
Query: 91 NDAAFSIPIKFNIKRSNLFVLSS---CDGFLCLGDRSRFYNPVK----MCNPVTGEYINL 143
++ + ++ S + + S +GF+ L +R + + NP TG+ I L
Sbjct: 96 DENFPVVATDYHKGFSGNWCMQSFQLVNGFIYLNNRLSLKGKIDRVSVIWNPSTGQQIPL 155
Query: 144 PEKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWR 203
P+ G+ S FGY I KQ+KV+ I + +EH V L T SWR
Sbjct: 156 PDLGVKNSHSK---SFFGYDPIEKQFKVL-----CITSSKEHQ----VLTLGTGRKLSWR 203
Query: 204 RISDAPKFEYDIFMNFP-SSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVVL 262
+I EY + ++P +NG+ +NG+ + YR + +V FD SE+F V
Sbjct: 204 KI------EYS-YPHYPRKKSNGICINGVLY---YRNTNA----MIVRFDVRSEEFRFVE 249
Query: 263 LAPSCRPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGVQESWTRLSCSSHNMHF 320
+ + +++N G LGV LF N LWV+ D ++ S HN F
Sbjct: 250 IKMYV--EILSLIN--YKGKLGV-LFPNTDLAQLWVLDDTN------KVEWSKHNFVF 296
>AT3G10430.1 | Symbols: | F-box family protein |
chr3:3242750-3243862 REVERSE
Length = 370
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 43/245 (17%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSFSRTFQLFEFQHENDAA 94
P +S+++ + CK +I+++ +F HL +S +FL Q+ + E A
Sbjct: 18 PAESLLRFKSTCKKWYELISNDKRFMYKHLDKSTKRFLRIEN--RERVQILDPVTEILAV 75
Query: 95 FSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPE-KGLDKRIE 153
+IP N R F L CDG + + MC G NL + ++I+
Sbjct: 76 STIP---NELRHKYFTLIHCDGLM-----------LGMCYEELGSDPNLAVWNPVMRKIK 121
Query: 154 GVVVS------------GFGYS-SISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDE 200
+ S GFGY + YK++R+ ++ D ++Y
Sbjct: 122 WIKPSPPLVCYWGSDYLGFGYDKTFRDNYKILRFT---YLGDDDDDESYPKCQIYEFNSG 178
Query: 201 SWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNV 260
SWR I E D+ +GV +NG +WI ++ + +++SFDF E FN
Sbjct: 179 SWRSIEAKFDGEIDV------EVDGVSVNGSMYWIELQE----KKNFILSFDFSKETFNR 228
Query: 261 VLLAP 265
+ +P
Sbjct: 229 ICDSP 233
>AT1G53550.1 | Symbols: | F-box family protein |
chr1:19983411-19984637 FORWARD
Length = 408
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 31/206 (15%)
Query: 116 GFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLDKRIEGVVVS----GFGYSSISKQYKV 171
G +C Y + NP TGEYI LP++ +++ ++ FGY I KQ+KV
Sbjct: 133 GLICSQHIEENYLFALISNPTTGEYIALPKQRMEEMNSETIIEKVRYSFGYDPIDKQFKV 192
Query: 172 VR--WVRRKIAAREEHDNVAVVTELYTLGDESWRRISDAPKFEYDIFMNFPSSANGVFLN 229
+R W+ R + E V+T G+ SWR +++ +G+ +N
Sbjct: 193 LRITWLHR--GSHEWSSEYQVLT--LGFGNISWRNTQCC-------VVHYLLEDSGICIN 241
Query: 230 GLFHWISYRKCGSYRSYYMVSFDFESEKFNVVLLAPSCRPKFTAMLNEVVV-----GVLG 284
G+ + Y R Y +V FD +EKF+ S T M N G LG
Sbjct: 242 GVLY---YPARLDNRKYTIVCFDVMTEKFSFT----SIDKDMTIMTNLSFSLIDYKGKLG 294
Query: 285 VCLFINDSEFGLWVMKDYGVQESWTR 310
C+ + + F LWV+++ + W++
Sbjct: 295 ACI-CDHTLFELWVLEN-AEEHKWSK 318
>AT1G53360.1 | Symbols: | F-box family protein-related |
chr1:19907517-19908548 FORWARD
Length = 343
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 119/284 (41%), Gaps = 27/284 (9%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSFSRTFQLFEFQ--HEND 92
P KSI + R V +++ Q +SR + F + F + Q ++N
Sbjct: 6 PAKSIARFRCVSESIHRRPDVTEQSLTKSMSRPRLLFALEVNKDLLFFSSPQPQNPYDNS 65
Query: 93 AAFSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLDKRI 152
+ + P K K + ++ G + L R V +CNPV+G+YI LP+ +
Sbjct: 66 SLVATPYKRFPKYLPTRICTTLGGLVFLQKWLRKKTRV-ICNPVSGDYITLPK----VKA 120
Query: 153 EGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWRRISDAPKFE 212
GV S FG+ I+KQ+KV+ + H + + T G WR I D
Sbjct: 121 TGVGESYFGFDPITKQFKVLCMTWSRYGTPNTHQVLTLET-----GKRLWRTIQDPILPH 175
Query: 213 YDIFMNFPSSANGVFLNG-LFHWISYRKCGSYRSYYMVSFDFESEKFNVVLLAPSC--RP 269
Y F + + +NG L++ + + S + +V FDF EKF+ + +A R
Sbjct: 176 YRSF-------DRICINGVLYYGADFEESQSSK---IVCFDFRFEKFSFINIADEGMFRG 225
Query: 270 KFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGVQESWTRLSC 313
+ L G LG + + E LWV++D W++ C
Sbjct: 226 SYKWTLFN-YKGKLGAHQYSRNGELVLWVLED-AENHKWSKSIC 267
>AT4G21240.1 | Symbols: | F-box family protein |
chr4:11322411-11323664 FORWARD
Length = 417
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 130/286 (45%), Gaps = 33/286 (11%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSFSRTFQLFEFQHE-NDA 93
P KS ++ R V K L IT+ P F + S + + +R +LF H+ +D
Sbjct: 49 PAKSAVRFRIVSK-LWLSITTRPYFIRSFAFPSSTRLCLMACVKARDMRLFISLHQHDDG 107
Query: 94 AFSIPIKFNIK--RSNLFVLSS--CDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLD 149
+++ + IK + + + SS +G +C GD FYN V + NP +++ LPE
Sbjct: 108 SYAHVDRCEIKSPKHDYYNPSSESVNGLVCFGD---FYNIV-VWNPSMRQHVTLPEPKPH 163
Query: 150 KRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLG-DESWRRISDA 208
+ + S GY + +YKV+ I+ ++ +V +TLG ESWR I ++
Sbjct: 164 STVRYFIRSCLGYDPVEDKYKVL-----SISGYHNGNHDPLV---FTLGPQESWRVIQNS 215
Query: 209 PKFEYDIFMNFPSSANGVFLNGLFHW---ISYRKCGSYR-SYYMVSFDFESEKFNVVLLA 264
P DI + S G +NG ++ I ++ + ++SFD EKFN +
Sbjct: 216 P---LDIPLPTGGSRVGTCINGHVYYEAQIRFKVDDIFNFENILMSFDVRYEKFNTIK-- 270
Query: 265 PSCRPKFTAMLNEVVVGVLGVCLFIND-SEFGLWVMKDYGVQESWT 309
+P + N ++ + F +D S WV+ D G ++ W+
Sbjct: 271 ---KPADPTLRNFMLNYQGKLAWFCSDYSSIRFWVLDD-GDKQEWS 312
>AT1G19160.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
Cyclin-like F-box (InterPro:IPR001810), F-box associated
type 3 (InterPro:IPR013187), F-box associated type 1
(InterPro:IPR017451); BEST Arabidopsis thaliana protein
match is: F-box family protein (TAIR:AT5G52610.1); Has
1084 Blast hits to 1065 proteins in 39 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1084;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:6614162-6615214 REVERSE
Length = 350
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 122/286 (42%), Gaps = 38/286 (13%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSFSRTFQLFEFQHENDAA 94
PVKS+ + V K +II S F + SR+ + +F T F + N +
Sbjct: 15 PVKSLARFLCVSKRCYSIIRSR-HFINLYQSRASTRESRVMFAFRDTNTFFRW---NFFS 70
Query: 95 FSIPIK--FNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLDKRI 152
S P NI ++ + +G +C+ R + +CNPVT + P+ G K+
Sbjct: 71 LSQPPSSVTNIDSTSYCMPVCVNGLICVEHMFRLW----ICNPVTKKITLFPDCGPRKQF 126
Query: 153 EGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDE-SWRRISDAPKF 211
+ GY I+ QYKV+ R EH + E++T GDE SWR I F
Sbjct: 127 TTWYM---GYDPINYQYKVLYLSR-------EHLIAPYIVEVFTFGDEGSWRMIEADENF 176
Query: 212 EYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFN--VVLLAPSCRP 269
GV +G+ ++ +Y G+ +V FD +EKF + + A +C
Sbjct: 177 H-------SPETRGVCTHGVLYYGAYTGDGA----KIVRFDVRTEKFGKFIEMPAEACSI 225
Query: 270 KFTAMLNEVVV---GVLGVCLFINDSEFGLWVMKDYGVQESWTRLS 312
+ ++ G LG+ S + LWV++D + W+++S
Sbjct: 226 HGVYLGLYTLLDYQGKLGLLATQATSTYDLWVLED-AEKHEWSKVS 270
>AT2G31470.1 | Symbols: | F-box family protein |
chr2:13407492-13408655 REVERSE
Length = 387
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 121/283 (42%), Gaps = 38/283 (13%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQ----FLHQSGSFSRTFQLFEFQHE 90
PVKSI +CR V K +I+ P F E +L++S + F Q F + +
Sbjct: 38 PVKSIARCRCVSKLWASILRL-PYFTELYLTKSCARPRLLFACQKHRELFFFSTPQPHNP 96
Query: 91 NDAAFSIPIKFNIK---RSNLFVLSSCDGFL------CLGDRSRFYNPVKMCNPVTGEYI 141
N+++ + F++K ++S G + L R +CNP TG+ +
Sbjct: 97 NESSSPLAASFHMKIPFDGRFNIISPIGGLVFVRYEQILKGRKTPEFVSAICNPSTGQSL 156
Query: 142 NLPEKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDE- 200
LP+ KRI G S FGY I KQ+KV+ + D V + TLG E
Sbjct: 157 TLPKPKTRKRIWG--TSHFGYDPIEKQFKVL--------SMNIGDGVYKEHYVLTLGTEN 206
Query: 201 -SWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFN 259
SWRRI + + + G+ +NG+ ++ + S + +V FD EKF+
Sbjct: 207 LSWRRIECS--------IPHVHGSKGICINGVLYYRAKADMFS-GTLMIVCFDVRFEKFS 257
Query: 260 VV-LLAPSCRPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKD 301
+ +L P+ + ++ V +I F +WV+ D
Sbjct: 258 YIKILKPTT--TLISYNGKLASLVWEGPSYICGKRFEMWVLGD 298
>AT3G23880.1 | Symbols: | F-box family protein |
chr3:8622061-8623155 REVERSE
Length = 364
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 131/314 (41%), Gaps = 33/314 (10%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHL-----------SRSPVQFLHQSGSFSRTFQ 83
PVKS+ + + VC + R++I S FA H ++SP + S ++
Sbjct: 27 PVKSLTRFKCVCSSWRSLI-SETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCC 85
Query: 84 LFEFQHENDAAFSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINL 143
+ + + S + R V+ +C G +C + + + NP L
Sbjct: 86 IHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCF--HVDYDKSLYLWNPTIKLQQRL 143
Query: 144 PEKGLDKRI-EGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESW 202
L+ E VV GFGY YKVV A ++ V + T++Y+ + W
Sbjct: 144 SSSDLETSDDECVVTYGFGYDESEDDYKVV-------ALLQQRHQVKIETKIYSTRQKLW 196
Query: 203 RRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVVL 262
R + P + S +G+++NG +W + S+ ++S+D ++F L
Sbjct: 197 RSNTSFPSG----VVVADKSRSGIYINGTLNWAATSS---SSSWTIISYDMSRDEFKE-L 248
Query: 263 LAPSC--RPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGVQESWTRLSCSSHNMHF 320
P C R FT L ++ G L + + + +WVMK++G SW++L F
Sbjct: 249 PGPVCCGRGCFTMTLGDLR-GCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIPGLTDF 307
Query: 321 LPIKYLRDGKKIML 334
+ ++ DG ++L
Sbjct: 308 VRPLWISDGLVVLL 321
>AT1G55070.1 | Symbols: | F-box family protein |
chr1:20551452-20552633 FORWARD
Length = 393
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 113/284 (39%), Gaps = 31/284 (10%)
Query: 36 VKSIIQCRRVCKTLRTIITSNPQFAENHLSRSP------VQFLHQSGSFSRTFQLFEFQH 89
KS+ +CR VCK L +II P + + + P FL FS T E
Sbjct: 49 AKSMAKCRCVCKLLSSII-RQPNYNQLFPIKYPDPPRFIFTFLGGGMLFSYTSTQPENPD 107
Query: 90 ENDAAFSIPIKF-NIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGL 148
EN + + +I R +LSS G +C + + + NP+TG+Y+ LP
Sbjct: 108 ENSSLVATAHHHTDIPRDFSQILSSVHGLVCYHRKIKNDTVFVIYNPITGQYVTLPILEA 167
Query: 149 DKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDES--WRRIS 206
I + GY I+K++KV+ EE D+ V T G + WR+I
Sbjct: 168 HATINYFAI---GYDPINKRFKVLCVTSVHHGTGEEFDSQHQVLTFET-GRRNLFWRKIQ 223
Query: 207 DAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVVLLAPS 266
+ + G+ + G+ ++ + +V FD SEKF + P
Sbjct: 224 CRRHYYTHRY------HKGICIKGVLYYAA-TSMKPMLGPMIVCFDVRSEKFGFITWKPP 276
Query: 267 CRPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGVQESWTR 310
+ L + ND++ LWV+ ++G + W++
Sbjct: 277 SLINYKGKLGSINS---------NDNDLVLWVL-EHGQERKWSK 310
>AT3G57590.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; CONTAINS
InterPro DOMAIN/s: Cyclin-like F-box
(InterPro:IPR001810), F-box associated type 3
(InterPro:IPR013187), F-box associated type 1
(InterPro:IPR017451); BEST Arabidopsis thaliana protein
match is: F-box family protein (TAIR:AT3G57580.1); Has
891 Blast hits to 856 proteins in 41 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 889;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr3:21330182-21331396 REVERSE
Length = 404
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 105/234 (44%), Gaps = 32/234 (13%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSP--VQFLHQSGSFSRTFQLFEFQHEND 92
P KS+I R + K +++ S P F E L+RS + L + Q +N
Sbjct: 17 PAKSVIGFRTLSKHWASMLRS-PVFTELFLTRSSNRPRLLFAAERNGEWLFFSSPQPQNR 75
Query: 93 AAFSIPIKFNIKRS---NLFVLSSCDGFLCLGDR--SRFYNPVKMCNPVTGEYINLPEKG 147
S + ++ K S + F+ S G LC D S+ +PV +CNP TG Y +LP+
Sbjct: 76 YEKSSHLDYHTKFSGDVSRFICSYVSGLLCFPDLWLSKDASPV-ICNPTTGMYESLPDLM 134
Query: 148 LDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDE--SWR-R 204
K G + G+ I KQ+KV+ RE H E+ TLG E SWR
Sbjct: 135 RYKNARGFL----GFDPIGKQFKVLSEAYPFSDQREHH-------EILTLGTEELSWRSN 183
Query: 205 ISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKF 258
I P ++ + + G+ +NG+ ++++ + S ++ FD SE+F
Sbjct: 184 IISCPAYDRSL-------SEGICINGVLYYLA--QTLGVPSCVIICFDVRSEEF 228
>AT1G11620.1 | Symbols: | F-box family protein |
chr1:3910833-3911924 FORWARD
Length = 363
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 124/300 (41%), Gaps = 53/300 (17%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQ-----------SGSFSRTFQ 83
P +S+++ R CK +I + P+F HLS +++ Q S F T
Sbjct: 19 PARSLVRLRSTCKQWEALI-AEPRFVNKHLSH--MRYREQQFTVFNNEHIVSPLFGSTTS 75
Query: 84 LFEFQHENDAAFSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGE--YI 141
+ + F I S +S CDG L +S + NP+ + +I
Sbjct: 76 YVGIDFNKPENCGVKLPFPIALSPAINISHCDGLLLYVTKSMLL----VANPLLSQKRWI 131
Query: 142 NLPEKGLDKRIEGVVVSGFGY----SSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTL 197
E G D ++ G GY SS YKVVR+ R N + V E+Y
Sbjct: 132 KCSE-GFDHSMDAY---GLGYLFNQSSGFYDYKVVRF-------RCGIKNSSRV-EVYAF 179
Query: 198 GDESWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEK 257
+SW+ + D + F P S+ V L G +W+ Y K G+ + SFDF E+
Sbjct: 180 KSDSWKVVVDT---NFGGFDGLPLSS--VCLRGTPYWLGYNKSGN-ELMSIQSFDFSKER 233
Query: 258 FNVVLLAPSCRPKFTAMLNEVVVGV-----LGVCLFINDS-EFGLWVMKDYGVQESWTRL 311
F + L P ++ + +G+ L + L +++ + LWVMK ++ W+RL
Sbjct: 234 FEPLFLPPQSIGS-RNLVKYISLGIFRGDQLSLLLECHETCKLHLWVMK----KQHWSRL 288
>AT1G53790.2 | Symbols: | F-box family protein |
chr1:20079558-20081394 REVERSE
Length = 461
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 54/330 (16%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQ-----FLHQSGSFSRTFQLFEFQH 89
P KSI + R V K +I+ P F E ++ S ++ F Q + F F H
Sbjct: 95 PAKSIARFRCVSKLWESIL-CRPDFKELFMTMSSIRPPLLLFTFQDDDGNLFF--FSSPH 151
Query: 90 E----NDAAFSIPIKFNIKRSN---LFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYIN 142
N+ +P +++++ + + S GF+C + R + + +CNPVTGE ++
Sbjct: 152 PQIPCNENTSLVPTRYHVQHTTDSFSEIGSPLCGFICRRGK-RNLDTMVICNPVTGESVS 210
Query: 143 LPEKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESW 202
LP+ L K I GY + KQ KV+ I + V + G+ W
Sbjct: 211 LPKVEL-KSINTETRPYLGYDPVRKQLKVLCIKSDDIPNTCDEHQVLTLEN----GNHLW 265
Query: 203 RRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVV- 261
R I P ++P S +G+ ++G+ ++ + + R +V FD SEKF+ +
Sbjct: 266 RTIQCKP--------HYPKS-DGICIDGILYYTAGFDMRA-RVSMVVCFDVRSEKFSFIN 315
Query: 262 -----LLAPSCRPKFTAMLNEVVVGVLG-VCL--------FINDSEFGLWVMKDYGVQES 307
L+ SC T + + +G L CL + ++E +W Y +
Sbjct: 316 IHVFMLMNDSC----TLINYKGKLGALQFTCLSPKRLRFWVLVNAEKNIWTKCIYALPPL 371
Query: 308 WTRLSCSSHNMHFLPIKYLRDGKKIMLGSY 337
W L + L I + DG +++L Y
Sbjct: 372 WNNLVQHTE----LAIVGMTDGGEVVLSQY 397
>AT1G53790.1 | Symbols: | F-box family protein |
chr1:20079694-20081394 REVERSE
Length = 444
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 54/330 (16%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQ-----FLHQSGSFSRTFQLFEFQH 89
P KSI + R V K +I+ P F E ++ S ++ F Q + F F H
Sbjct: 95 PAKSIARFRCVSKLWESIL-CRPDFKELFMTMSSIRPPLLLFTFQDDDGNLFF--FSSPH 151
Query: 90 E----NDAAFSIPIKFNIKRSN---LFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYIN 142
N+ +P +++++ + + S GF+C + R + + +CNPVTGE ++
Sbjct: 152 PQIPCNENTSLVPTRYHVQHTTDSFSEIGSPLCGFICRRGK-RNLDTMVICNPVTGESVS 210
Query: 143 LPEKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESW 202
LP+ L K I GY + KQ KV+ I + V + G+ W
Sbjct: 211 LPKVEL-KSINTETRPYLGYDPVRKQLKVLCIKSDDIPNTCDEHQVLTLEN----GNHLW 265
Query: 203 RRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVV- 261
R I P ++P S +G+ ++G+ ++ + + R +V FD SEKF+ +
Sbjct: 266 RTIQCKP--------HYPKS-DGICIDGILYYTAGFDMRA-RVSMVVCFDVRSEKFSFIN 315
Query: 262 -----LLAPSCRPKFTAMLNEVVVGVLG-VCL--------FINDSEFGLWVMKDYGVQES 307
L+ SC T + + +G L CL + ++E +W Y +
Sbjct: 316 IHVFMLMNDSC----TLINYKGKLGALQFTCLSPKRLRFWVLVNAEKNIWTKCIYALPPL 371
Query: 308 WTRLSCSSHNMHFLPIKYLRDGKKIMLGSY 337
W L + L I + DG +++L Y
Sbjct: 372 WNNLVQHTE----LAIVGMTDGGEVVLSQY 397
>AT2G43260.1 | Symbols: | F-box family protein / S locus-related |
chr2:17983744-17985089 REVERSE
Length = 420
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 42/290 (14%)
Query: 36 VKSIIQCRRVCKTLRTIITSNPQFAENHL----SRSPVQFLHQSGSFSRTFQLFEFQHEN 91
KSI++CR V K R+++ S+ +FAE H+ SR + + R L E + E
Sbjct: 27 TKSILKCRIVSKQWRSLLESS-RFAERHMSLQNSRRRILAAYNCDCGGRRKLLPESRFEG 85
Query: 92 DAAFSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLDKR 151
D + + + R ++ +C G +C ++ + + + NP T + P GL+
Sbjct: 86 DEEI-VYLHCDASRPSM----TCQGVICFPEQ----DWIIVLNPSTSQLRRFPS-GLNHN 135
Query: 152 IE-----------GVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDE 200
G V GFG ++ +YKVVR R+E V G+
Sbjct: 136 CRFRIGLWKTFSPGNWVMGFGRDKVNGRYKVVRMSFAFWRVRQEEPVVECGVLDVDTGE- 194
Query: 201 SWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNV 260
WR++S P +N S + V +NG +W+ + Y +++ D E+F+
Sbjct: 195 -WRKLSPPP-----YVVNVGSKS--VCVNGSIYWLHIQTV-----YRILALDLHKEEFHK 241
Query: 261 VLLAPSCRPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGVQESWTR 310
V + P+ T M+N VL + + +W M Y +E W++
Sbjct: 242 VPVPPTQITVDTQMVNLEDRLVLAITRVSPEWILEVWGMDTY--KEKWSK 289
>AT3G08750.1 | Symbols: | F-box family protein |
chr3:2656716-2657825 REVERSE
Length = 369
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 27/234 (11%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSR-SPVQFLHQSGSFSRTF--QLFEFQHEN 91
P +S+I+ + CK +IT +F NHL SP +F+ RT+ Q+ + E
Sbjct: 25 PAESLIRFKSTCKKWYNLITEK-RFMYNHLDHYSPERFI-------RTYDQQIIDPVTEI 76
Query: 92 DAAFSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLDKR 151
+ IP +F ++ + CDG + R ++ N + + NPV E I + +
Sbjct: 77 LSDALIPDEFR-DLYPIYSMVHCDGLMLCTCR-KWDNSLAVWNPVLRE-IKWIKPSVCYL 133
Query: 152 IEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWRRISDAPKF 211
V G+ + YK+++ + R + N E+Y +SW+ + KF
Sbjct: 134 HTDYVGIGYDDNVSRDNYKILKLLGRLPKDDDSDPNC----EIYEFKSDSWKTL--VAKF 187
Query: 212 EYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVVLLAP 265
++DI + NGV + G +WI+ +K + ++ FDF +E F + + P
Sbjct: 188 DWDIDIR---CNNGVSVKGKMYWIAKKK----EDFTIIRFDFSTETFKEICVCP 234
>AT1G32420.1 | Symbols: | F-box family protein |
chr1:11701995-11702903 FORWARD
Length = 302
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 121/280 (43%), Gaps = 46/280 (16%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSFSRTFQLFEFQHE---- 90
P KS+++ + V K +II+S F ++ ++RS Q R +L F H+
Sbjct: 50 PAKSLLRFQCVSKQWLSIISSRRDFIDSIVTRSLTQ------PPPRDIKLI-FHHQVLYP 102
Query: 91 --NDAAFSIPIKFNIKRSNLFVLSS----CDGFLCLGDRSRFYNPVKMCNPVTGEYINLP 144
+ FS N + +L +S G +C S V + NP T +Y +P
Sbjct: 103 GPHFFIFSSTYPQNTDKESLTTRASSYHYVRGLICCW--SHCPTTVDIYNPTTRQYYTVP 160
Query: 145 EKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGD---ES 201
+ + IE FGY + QYKV+ V K E +++T+GD +
Sbjct: 161 DTNRYQYIETCF---FGYDPVENQYKVM--VLPKYYMEES------PCQVFTVGDPIEKP 209
Query: 202 WRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVV 261
WR I I ++F + V +NG+ ++ + + GS +Y++VSFD SEKFN V
Sbjct: 210 WRDIQG-------IGVHF-LLKDAVCINGVIYYQATNEYGS--TYFLVSFDVRSEKFNHV 259
Query: 262 LLAPSCRPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKD 301
++N G LG+ + +WVM+D
Sbjct: 260 KAPKILTDHPCTLIN--YQGKLGLIMCCKKG-LEIWVMED 296
>AT1G47810.1 | Symbols: | F-box family protein |
chr1:17603504-17604559 FORWARD
Length = 351
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 132 MCNPVTGEYINLPEKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVV 191
+CNP G+ INLP G + I G S GY I QYKV+ + +
Sbjct: 155 ICNPSIGKSINLPTLGSSETIIG---SFLGYDPIHAQYKVLCLNKSSLQ--------FCG 203
Query: 192 TELYTLGDE--SWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMV 249
++ TLG + SWR I P Y V ++G+ ++ + R + +V
Sbjct: 204 HQVLTLGAQNCSWRMI-QCPTPHY-------PGTTSVCIDGVLYYSASRGFTMHEPLNLV 255
Query: 250 SFDFESEKFNVVLLAP-----SCRPKFTAMLNEVVVGVLGVCLFINDSEFGLWVMKDYGV 304
FD +E + + P S +P +V V C +FGLWV++D
Sbjct: 256 RFDLRTESLEIASVFPEDFKSSVKPSLINYRGKVAVFSKYFC-----GDFGLWVLEDAKK 310
Query: 305 QESWTR 310
Q+ W++
Sbjct: 311 QQ-WSK 315
>AT4G09190.1 | Symbols: | F-box family protein |
chr4:5855176-5856327 FORWARD
Length = 383
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 125/297 (42%), Gaps = 51/297 (17%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSFSRTFQLFEFQ-HENDA 93
P KSI++ R V K +IIT+ P F + ++RS SR L FQ H+
Sbjct: 35 PAKSIVRFRSVSKLWSSIITT-PDFTSSVVTRSLS---------SRPCVLLIFQKHDKLF 84
Query: 94 AFSIPI----------KFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINL 143
F+ P+ F N L C+ L N + + NP+T + L
Sbjct: 85 FFASPVHQKKTCPNVENFQYTIPNNGKLQRCESVHGLIYLETSTNVMFIRNPITKSFFTL 144
Query: 144 PEKGLDKRIEGVVVSGF-GYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLG-DES 201
P+ LD + EG ++GF GY I+ +YKV + +E + + ++ TLG ES
Sbjct: 145 PK--LDSK-EGRPLTGFLGYDPINGKYKV-------LCILKERNKIGIL----TLGAQES 190
Query: 202 WRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVV 261
WR +S ++ + ++G+ ++ G + ++SFD SEKF+++
Sbjct: 191 WRILSKG------FLSHYKVTGYAKCIDGVIYYEGSFGDGLRQELAIMSFDLRSEKFSLI 244
Query: 262 LLAPSCRPKFTAMLN--EVVVGVLGVCLFINDSEFGLWVMKDYGVQESWTRLSCSSH 316
PK +++ G L + I S LW+++D + W SH
Sbjct: 245 -----KHPKKSSIATCWSSYEGRLALVSSIA-SGVSLWILEDADNHKQWIYKHFPSH 295
>AT3G23260.1 | Symbols: | F-box family protein |
chr3:8313334-8314422 FORWARD
Length = 362
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 112/286 (39%), Gaps = 29/286 (10%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENH---LSRSP-VQFLHQSGSFSRTFQLFEFQHE 90
P K + + R K + + FA+ H ++ P + L S + + L +
Sbjct: 19 PAKYLARLRSTSKQWNAL-SKTGSFAKKHSANATKEPLIIMLKDSRVYLASVNLHGVHNN 77
Query: 91 NDAAFSIPIKFNIKRSNLFVLSSCDGFLCLGDRSRFYNPVKMCNPVTGEYINLPEKGLDK 150
+F + + +K ++ + CDG L L N +++ NP +GE + +
Sbjct: 78 VAQSFELGSRLYLKDPHISNVFHCDGLLLLCSIKE--NTLEVWNPCSGEAKLIKPRHSYY 135
Query: 151 RIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWRRISDAPK 210
+ G+ S K+YKV+R I+ + + E+Y ++SWR
Sbjct: 136 KESDFYALGYDNKSSCKKYKVLR----VISQVHVQGDFKIEYEIYDFTNDSWR--VHGAT 189
Query: 211 FEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVVLLAPSCRPK 270
E I P S G +W+ + Y+ Y +SFDF +E+F + L P P
Sbjct: 190 TELSIRQKHPVSVKGST-----YWVVRNRYFPYK--YFLSFDFSTERFQSLSL-PQPFPY 241
Query: 271 FTAMLNEVVVGVLGVCLF------INDSEFGLWVMKDYGVQESWTR 310
L+ VV +CLF + +WV G SW++
Sbjct: 242 LVTDLS--VVREEQLCLFGYYNWSTTSEDLNVWVTTSLGSVVSWSK 285
>AT1G47340.1 | Symbols: | F-box family protein |
chr1:17354123-17356494 REVERSE
Length = 459
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 40/214 (18%)
Query: 132 MCNPVTGEYINLPEKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVV 191
+CNP+TG Y +LP ++ S FG+ I KQYKV+ +A D+ V+
Sbjct: 170 ICNPLTGRYASLPFLERYRK----AFSFFGFDPIEKQYKVLF-----MAYPSGPDHHTVL 220
Query: 192 TELYTLGDESWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSF 251
T + G+ SWR+I + K +DI ++G+ +NG+ +++ ++ +V F
Sbjct: 221 T--FGTGEMSWRKIECSVK--HDIV------SDGICINGVMYYLG-DTSEFMTAFVVVCF 269
Query: 252 DFESEKFNVVLLAPSCRPKFTAMLNEVV--VGVLGVCL---FINDS-EFGLWVMKDYGVQ 305
D SE F+ + C EV+ G LG+ + +D+ E LWV++D
Sbjct: 270 DVRSETFSFIYPGSYC---------EVINYKGKLGLVFCDDYTDDAIELRLWVLEDKEKI 320
Query: 306 ESWT----RLSCSSHNMHFLPIKYLRDGKKIMLG 335
E W+ +L + H++ I + +I+L
Sbjct: 321 E-WSKYAYKLKDEKFSAHYVSIVGVSAAGEIVLS 353
>AT2G16450.1 | Symbols: | F-box family protein |
chr2:7131520-7132803 REVERSE
Length = 427
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 38/223 (17%)
Query: 132 MCNPVTGEYINLPEKGLDKRIEGVVVSGFGYSSISKQYKVVRWVRRKIAAREEHDNVAVV 191
+CNP TG Y LP + ++ S FG+ I KQYK + V + H V
Sbjct: 139 ICNPTTGRYAILPNRYTYRK----AFSFFGFDPIDKQYKALSMV---YPSGPGHSRVIT- 190
Query: 192 TELYTLGDESWRRISDAPKFEYDIFMNFPSSANGVFLNGLFHWIS-----YRKCGSYRS- 245
+ GD WRRI + +DI + GV +NG+ +++ R G++ +
Sbjct: 191 ---FGAGDLKWRRIKCS--LRHDI------KSEGVCINGVLYYLGDTSDWSRVNGNHVTS 239
Query: 246 -YYMVSFDFESEKFNVVLLAPSCRPKFTAMLNEVVVGVLGVCLFINDSEFG-LWVMKDYG 303
Y +V FD SEKF + + CR ++N G L V + +D + L+ K
Sbjct: 240 GYMIVCFDVRSEKFTFIDVKRFCR-----LIN--YKGKLAVIYWEDDVDIQELYYKKGID 292
Query: 304 VQESWTRLSCSSHNMHFLPIKYLRDGKKIMLGSYTKMGFRWYD 346
V+E + + ++ + L + L D +K ++K + W D
Sbjct: 293 VEE-YVENNVNADATNELCVWILADVEK---QEWSKHAYTWTD 331
>AT4G04690.1 | Symbols: | F-box family protein (FBX15) |
chr4:2373999-2375135 REVERSE
Length = 378
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 104/238 (43%), Gaps = 34/238 (14%)
Query: 35 PVKSIIQCRRVCKTLRTIITSNPQFAENHLSRSPVQFLHQSGSFSRTFQLFEFQHENDAA 94
P +S+ + + CK IITS +F NHL SP +F+ +T Q+ + +
Sbjct: 24 PAESLNRFKSTCKQWYGIITSK-RFMYNHLDHSPERFIRIDD--HKTVQIMDPMTGIFSD 80
Query: 95 FSIPIKFNIKRSNLFVLSSCDGF-LCLG-----DRSRFYNPVKMCNPVTGEYINLPEKGL 148
+P F S + CDG LC+ +R+R N + + NPVT + + + L
Sbjct: 81 SPVPDVFRSPHS-FASMVHCDGLMLCICSDSSYERTREAN-LAVWNPVTKKIKWI--EPL 136
Query: 149 DKRIEGVVVSGFGYSSISKQ-YKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWRRISD 207
D E G GY + ++ YK+VR+ + D+ E+Y +SWR +
Sbjct: 137 DSYYETDYF-GIGYDNTCRENYKIVRF-----SGPMSFDDTEC--EIYEFKSDSWRTLDT 188
Query: 208 APKFEYDIFMNFPSSANGVFLNGLFHWISYRKCGSYRSYYMVSFDFESEKFNVVLLAP 265
+D++ + GV + G +WI+ K +++ FDF E F V + P
Sbjct: 189 K---YWDVY----TQCRGVSVKGNMYWIADTK-----EKFILRFDFSMETFKNVCVCP 234
>AT2G15640.1 | Symbols: | F-box family protein |
chr2:6816792-6818072 REVERSE
Length = 426
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 42/247 (17%)
Query: 109 FVLSSCDGFLCL-GDRSRFYNPVKMCNPVTGEYINLPEKGLDKRIEGVVVSGFGYSSISK 167
F + G + L GDR P+ +CNP TG Y LP + ++ S FG+ I K
Sbjct: 117 FSIGYASGLIYLYGDRGEA-TPL-ICNPTTGRYAILPNRYTYRK----AYSFFGFDPIDK 170
Query: 168 QYKVVRWVRRKIAAREEHDNVAVVTELYTLGDESWRRISDAPKFE-YDIFMNFPSSANGV 226
QYK + I + ++T + G WR+I+ +++ +DI + G+
Sbjct: 171 QYKAL-----SIFYPSGPGHSKILT--FGAGHMKWRKINCPLRYDRHDI------KSEGI 217
Query: 227 FLNGLFHWI-SYRKC-----GSYRSYYMVSFDFESEKFNVVLLAPSCRPKFTAMLNEVVV 280
+NG+ +++ S C G Y +V FD SEKF + + CR ++N
Sbjct: 218 CINGVLYYLGSTSDCVKDGHGIVSDYVIVCFDIRSEKFTFIDVERFCR-----LIN--YK 270
Query: 281 GVLGVCLFINDSE-FGLWVMKDYGVQESWTRLSCSSHNMHFLPIKYLRDGKKIMLGSYTK 339
G L V + +D + + L+ Y + + + + +++ L + L D KK ++K
Sbjct: 271 GKLAVIYWEDDVDIYKLY----YSDVDEYVEYNINDDDINELRVWVLEDVKK---QQWSK 323
Query: 340 MGFRWYD 346
+ W D
Sbjct: 324 YAYTWTD 330