Jatropha Genome Database

JcCA0267571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0267571.10 - phase: 2 /partial
         (272 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor, ...   457   e-129
AT5G46280.1 | Symbols: MCM3 | DNA replication licensing factor, ...   189   1e-48
AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding / DNA-de...   188   3e-48
AT4G02060.1 | Symbols: PRL, MCM7 | PRL (PROLIFERA); ATP binding ...   180   1e-45
AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family ...   179   2e-45
AT2G07690.1 | Symbols: MCM5 | minichromosome maintenance family ...   177   6e-45
AT3G09660.1 | Symbols: MCM8 | MCM8; ATP binding / DNA binding / ...   144   8e-35
AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding / ...   129   1e-30

>AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor,
           putative | chr2:7126536-7130665 REVERSE
          Length = 847

 Score =  457 bits (1177), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/252 (85%), Positives = 236/252 (93%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           FADKQIVRLQETPDEIPEGGTPHTVSLL+HDKLVD  KPGDR+EVTGIYRAM+VRVGP  
Sbjct: 314 FADKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDNGKPGDRIEVTGIYRAMTVRVGPAH 373

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
           RTVKS+FKTYIDCLHIKKA K RM AEDPM+VDN  R+V+ED++ D+ K+++ +ELSKQP
Sbjct: 374 RTVKSVFKTYIDCLHIKKASKLRMSAEDPMDVDNSLRRVDEDVELDEEKLRKFQELSKQP 433

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
           DIY+RL++SLAPNIWELDDVK+GLLCQLFGGNAL L SGA+FRGDINILLVGDPGTSKSQ
Sbjct: 434 DIYERLSRSLAPNIWELDDVKKGLLCQLFGGNALNLASGANFRGDINILLVGDPGTSKSQ 493

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
           LLQYIHKLSPRGIYTSGRGSSAVGLTAYV+KDPETGETVLESGALVLSDRGICCIDEFDK
Sbjct: 494 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDK 553

Query: 241 MSEKCRSMLHEV 252
           MS+  RSMLHEV
Sbjct: 554 MSDSARSMLHEV 565


>AT5G46280.1 | Symbols: MCM3 | DNA replication licensing factor,
           putative | chr5:18769902-18773606 REVERSE
          Length = 776

 Score =  189 bits (480), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/252 (39%), Positives = 153/252 (60%), Gaps = 20/252 (7%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           + D Q + +QE P+    G  P +V ++  D LVD+ KPGDRV V GIY+A+    G ++
Sbjct: 184 YKDHQTLSIQEVPENAAPGQLPRSVDVIAEDDLVDSCKPGDRVSVFGIYKALP---GKSK 240

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
            +V  +F+T +   +I   +K    A  P+              +    +  +K ++++ 
Sbjct: 241 GSVNGVFRTILIANNIALLNKE---ANAPI--------------YTKQDLDNIKNIARRD 283

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
           D +D L +SLAP+I+    +K+ ++  + GG    L +G   RGDIN+++VGDP  +KSQ
Sbjct: 284 DAFDLLARSLAPSIYGHAWIKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQ 343

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
           LL+ I  ++P  I T+GRGSS VGLTA V+ D ETGE  LE+GA+VL+D+GI CIDEFDK
Sbjct: 344 LLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADKGIVCIDEFDK 403

Query: 241 MSEKCRSMLHEV 252
           M+++ R  +HEV
Sbjct: 404 MNDQDRVAIHEV 415


>AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding /
           DNA-dependent ATPase | chr1:16970291-16974457 FORWARD
          Length = 936

 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/252 (39%), Positives = 151/252 (59%), Gaps = 18/252 (7%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           + + Q + +QE+P  +P G  P    +++ + L+D  +PG+ +EVTGIY   +  +    
Sbjct: 396 YRNYQKLTIQESPGTVPAGRLPRHKEVILLNDLIDCARPGEEIEVTGIY-TNNFDLSLNT 454

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
           +    +F T ++  ++ K            ++ +  +  +ED         Q++ELSK P
Sbjct: 455 KNGFPVFATVVEANYVTKK----------QDLFSAYKLTQEDKT-------QIEELSKDP 497

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
            I +R+ KS+AP+I+  +D+K  L   +FGG    +      RGDIN+LL+GDPGT+KSQ
Sbjct: 498 RIVERIIKSIAPSIYGHEDIKTALALAMFGGQEKNIKGKHRLRGDINVLLLGDPGTAKSQ 557

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
            L+Y+ K   R +YT+G+G+SAVGLTA V KDP T E  LE GALVL+DRGIC IDEFDK
Sbjct: 558 FLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDK 617

Query: 241 MSEKCRSMLHEV 252
           M+++ R  +HE 
Sbjct: 618 MNDQDRVSIHEA 629


>AT4G02060.1 | Symbols: PRL, MCM7 | PRL (PROLIFERA); ATP binding /
           DNA binding / DNA-dependent ATPase/
           nucleoside-triphosphatase/ nucleotide binding |
           chr4:901484-905297 FORWARD
          Length = 716

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 147/252 (58%), Gaps = 18/252 (7%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           F   Q  ++QE  + +P+G  P ++++ +  +L   V PGD VE +GI+  +    G   
Sbjct: 223 FLKFQEAKMQELAEHVPKGHIPRSMTVHLRGELTRKVSPGDVVEFSGIFLPIPY-TGFKA 281

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
                +  TY++   +    K                   E+ +F   + +Q+  L++  
Sbjct: 282 LRAGLVADTYLEATSVTHFKKKY-----------------EEYEFQKDEEEQIARLAEDG 324

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
           DIY++L++SLAP I+  +D+K+ LL  L G    +L  G   RGD++I L+GDPG +KSQ
Sbjct: 325 DIYNKLSRSLAPEIYGHEDIKKALLLLLVGAPHRQLKDGMKIRGDVHICLMGDPGVAKSQ 384

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
           LL++I  ++PRG+YT+G+GSS VGLTA V +D  T E VLE GALVL+D GIC IDEFDK
Sbjct: 385 LLKHIINVAPRGVYTTGKGSSGVGLTAAVMRDQVTNEMVLEGGALVLADMGICAIDEFDK 444

Query: 241 MSEKCRSMLHEV 252
           M E  R+ +HEV
Sbjct: 445 MDESDRTAIHEV 456


>AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family
           protein / MCM family protein | chr5:18006431-18010542
           REVERSE
          Length = 831

 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/278 (35%), Positives = 154/278 (55%), Gaps = 27/278 (9%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTG---IYRAMSVRVG 57
           FAD Q VR+QET  EIP G  P ++ +++  ++V+  + GD V  TG   +   +S    
Sbjct: 197 FADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDISALAA 256

Query: 58  PTQRT--------VKSLFKTY-----IDCLHIKKADKSRMLAEDPMEVDNGSRQV----- 99
           P +R          KS    +     +  L ++          + +++ +GSR       
Sbjct: 257 PGERAECRRDSSQQKSSTAGHEGVQGLKALGVRDLSYRLAFIANSVQIADGSRNTDMRNR 316

Query: 100 ------EEDIQFDDAKIQQLKELSKQPDIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNA 153
                 ++  QF   ++ +++++   PD +++L  S+AP ++   D+KR +L  L GG  
Sbjct: 317 QNDSNEDDQQQFTAEELDEIQQMRNTPDYFNKLVGSMAPTVFGHQDIKRAVLLMLLGGVH 376

Query: 154 LKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDP 213
                G + RGDIN+ +VGDP  +KSQ L+Y   + PR +YTSG+ SSA GLTA V+K+P
Sbjct: 377 KTTHEGINLRGDINVCIVGDPSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEP 436

Query: 214 ETGETVLESGALVLSDRGICCIDEFDKMSEKCRSMLHE 251
           ETGE  +E+GAL+L+D GICCIDEFDKM  K +  +HE
Sbjct: 437 ETGEFCIEAGALMLADNGICCIDEFDKMDIKDQVAIHE 474


>AT2G07690.1 | Symbols: MCM5 | minichromosome maintenance family
           protein / MCM family protein | chr2:3523379-3527388
           REVERSE
          Length = 727

 Score =  177 bits (449), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 142/253 (56%), Gaps = 16/253 (6%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGP-T 59
           + D+Q ++LQE P+++P G  P  + L +   LV  + PG R+ V GIY          +
Sbjct: 218 YVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTVMGIYSIFQASSSSNS 277

Query: 60  QRTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQ 119
            +   ++ + YI  + ++  D +   +  P               F   + ++ K+ +  
Sbjct: 278 HKGAVAIRQPYIRVVGLE--DTNEASSRGPA-------------NFTPDEEEEFKKFADS 322

Query: 120 PDIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKS 179
            D+Y  +   +AP+I+  +DVKR   C LFGG+   LP G   RGDIN+LL+GDP T+KS
Sbjct: 323 QDVYKNICTKIAPSIFGHEDVKRAAACLLFGGSRKSLPDGVKLRGDINVLLLGDPSTAKS 382

Query: 180 QLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFD 239
           Q L+++ K +P  +YTSG+GSSA GLTA V +D  T E  LE GA+VL+D G+ CIDEFD
Sbjct: 383 QFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDSSTREFYLEGGAMVLADGGVVCIDEFD 442

Query: 240 KMSEKCRSMLHEV 252
           KM  + R  +HE 
Sbjct: 443 KMRPEDRVAIHEA 455


>AT3G09660.1 | Symbols: MCM8 | MCM8; ATP binding / DNA binding /
           DNA-dependent ATPase/ nucleoside-triphosphatase/
           nucleotide binding | chr3:2961314-2966166 REVERSE
          Length = 777

 Score =  144 bits (362), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 96/269 (35%), Positives = 144/269 (53%), Gaps = 33/269 (12%)

Query: 3   DKQIVRLQE--TPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIY----RAMSVRV 56
           D Q +R+QE   P++  EG  P TV   + + LVD   PGD V VTGI       M +  
Sbjct: 223 DFQKIRVQELQKPEDHEEGRVPRTVECELMEDLVDICIPGDVVTVTGIIGVINNYMDIGG 282

Query: 57  GPTQRTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQV----------EEDIQFD 106
           G ++   +  +  +I+ + +K  +  R  A +  E  + S Q           + D++F 
Sbjct: 283 GKSKTKNQGFYYLFIEAVSVK--NTKRQSAFENSEDSSSSAQTADVGDLYSFSQRDLEF- 339

Query: 107 DAKIQQLKELSKQPDIYDRLTKSLAPNIWELDDVKRGLLCQLFGG------NALKLPSGA 160
              I + KE     D + R+  S+ P+I+  + VK G+   LFGG      +  K+P   
Sbjct: 340 ---IVKFKE-EYGSDTFRRILHSVCPSIYGHEIVKAGITLSLFGGVRKHSMDRNKVP--- 392

Query: 161 SFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVL 220
             RGDI++++VGDPG  KSQLLQ    +SPRGIY  G  ++  GLT  V KD  T +   
Sbjct: 393 -VRGDIHVIIVGDPGLGKSQLLQAAAAISPRGIYVCGNATTRAGLTVAVVKDSMTNDYAF 451

Query: 221 ESGALVLSDRGICCIDEFDKMSEKCRSML 249
           E+GA+VL+D G+CCIDEFDKM+ + +++L
Sbjct: 452 EAGAMVLADGGLCCIDEFDKMTTEHQALL 480


>AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding /
           DNA-dependent ATPase/ nucleoside-triphosphatase/
           nucleotide binding | chr2:5909240-5913817 FORWARD
          Length = 646

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 130/257 (50%), Gaps = 33/257 (12%)

Query: 3   DKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQRT 62
           D Q +++QE    +  G  P ++ +++ D LVD VK GD V V+GI          T + 
Sbjct: 204 DYQEIKIQENTQVLGVGVIPRSILVVLKDDLVDNVKAGDDVVVSGIL---------TSKW 254

Query: 63  VKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEE---DIQFDDAKIQQLKEL-SK 118
              L     D               +PM + N  R+  E   +I   D  I++ K   S 
Sbjct: 255 SHDLKDVRCDL--------------EPMLIANHVRRTNELKSEIDISDDLIEKFKNFWSH 300

Query: 119 QPDI----YDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDP 174
             D      + + + + P ++ L  VK  +   L GG      SG   RG+ ++LL+GDP
Sbjct: 301 FRDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLIGDP 360

Query: 175 GTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICC 234
           GT KSQ L++  KLS R + T+G GS++ GLT    KD   GE +LE+GALVL+D G+CC
Sbjct: 361 GTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVTAVKD--GGEWMLEAGALVLADGGLCC 418

Query: 235 IDEFDKMSEKCRSMLHE 251
           IDEFD M E  R+ +HE
Sbjct: 419 IDEFDSMREHDRATIHE 435