Jatropha Genome Database

JcCA0265561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265561.10 + phase: 2 /partial
         (128 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21520.1 | Symbols:  | transducin family protein / WD-40 repe...   158   8e-40

>AT4G21520.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr4:11447514-11450377 REVERSE
          Length = 425

 Score =  158 bits (399), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 83/103 (80%), Gaps = 4/103 (3%)

Query: 1   LYRSSEQTNQRILFDIEPFGRHLGTGGQDGLVHIYDLQTGQWTSSFQAAADTVSGFSFHP 60
           LYR++E TNQR+ FDIEP GRHLGTGGQDGLVH+YDLQTG W S +QAA+DTV+ FSFHP
Sbjct: 295 LYRATENTNQRVFFDIEPCGRHLGTGGQDGLVHMYDLQTGNWVSGYQAASDTVNAFSFHP 354

Query: 61  FLPMAASSSGHRRFQVPDD----GHENLLLNDDENCASVWSFF 99
           +LPMAA+SSGHRRF +PDD        L L  DENC S+WSF+
Sbjct: 355 YLPMAATSSGHRRFAIPDDDDGEDKNELQLKADENCVSLWSFY 397