Jatropha Genome Database

JcCA0265541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265541.20 - phase: 0 /TE/partial
         (396 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29090.1 | Symbols:  | reverse transcriptase, putative / RNA-...    57   3e-08
AT3G09510.1 | Symbols:  | nucleic acid binding | chr3:2921804-29...    53   3e-07
AT2G34320.1 | Symbols:  | nucleic acid binding | chr2:14484959-1...    51   2e-06
AT2G04420.1 | Symbols:  | nucleic acid binding | chr2:1535561-15...    49   5e-06

>AT4G29090.1 | Symbols:  | reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative |
           chr4:14333528-14335255 FORWARD
          Length = 575

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQLVPWESNMQN--RWHPL 245
           W LW  RN+L+++ +  ++  ++R  +  L  WRI    E     P + N  +  RW P 
Sbjct: 365 WRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKP-QVNRSSCGRWRPP 423

Query: 246 LTGF-KCNVDASFDPNSVHAAAGWIVRDCAG--RCMGGRAMKLGRVTSAPIAEAIVVREA 302
              + KCN DA+++ ++     GW++R+  G  + MG RA  L ++ S   AE   +R A
Sbjct: 424 PHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA--LPKLKSVLEAELEAMRWA 481

Query: 303 LSWLKKQYQGHRLLLENDNLLVIQ---------ALLKKVRITLILVPQFGIVKF 347
           +  L + +Q + ++ E+D+ ++I+         +L   ++    L+ QF  VKF
Sbjct: 482 VLSLSR-FQYNYVIFESDSQVLIEILNNDEIWPSLKPTIQDLQRLLSQFTEVKF 534


>AT3G09510.1 | Symbols:  | nucleic acid binding |
           chr3:2921804-2923258 FORWARD
          Length = 484

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 8/138 (5%)

Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQLVPWESNMQNR--W-HP 244
           W +W ARN +++ +     +  V   +   + W  A    +    P     +N+  W +P
Sbjct: 270 WRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNP 329

Query: 245 LLTGFKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAEAIVVREAL- 303
             T  KCN DA FD   + A  GWI+R+  G  +   +MKL   ++   AE   +  AL 
Sbjct: 330 PATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQ 389

Query: 304 -SWLKKQYQGHRLLLEND 320
            +W++   Q   + +E D
Sbjct: 390 QTWIRGYTQ---VFMEGD 404


>AT2G34320.1 | Symbols:  | nucleic acid binding |
           chr2:14484959-14485837 FORWARD
          Length = 292

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 9/146 (6%)

Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQLVPW-ESNMQNRWH-PL 245
           W LW +RN+L+++ +  D+  ++R        W     +E     P  E N+  +W  P 
Sbjct: 82  WRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAPP 141

Query: 246 LTGFKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAEAIVVREALSW 305
               KCN DA++   +     GWI+R+ +G  +   A  L R  +   AE     EAL W
Sbjct: 142 YQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAEL----EALRW 197

Query: 306 ---LKKQYQGHRLLLENDNLLVIQAL 328
                 ++   R++ E+D   ++  L
Sbjct: 198 AVLTMSRFNYKRIIFESDAQALVNLL 223


>AT2G04420.1 | Symbols:  | nucleic acid binding |
           chr2:1535561-1536226 FORWARD
          Length = 221

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIAN----SIEEYQLVPW----ESNMQ 239
           W LW +RN+L++Q Q     + ++  +  +  W  A     S+  Y +       ES  Q
Sbjct: 2   WRLWRSRNQLVFQHQNLSWQSTLKRAKDDVQEWENAQEYIQSLNHYTVREGCNNRESTHQ 61

Query: 240 NRWHPLLTGFKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAE--AI 297
               P +   KCN D SF+  +    +GW++RD  G   G      G + +A  +E  A+
Sbjct: 62  KWEQPPMGWIKCNYDGSFNYRTQQTNSGWLIRDDKGFYKGAAQAVGGTMNNALESELQAL 121

Query: 298 VVREALSWLKKQYQGHR-LLLENDNLLVIQALLKK 331
           V+    +W     QG+R ++ E D+  V + L +K
Sbjct: 122 VMAMQHTWS----QGYRKVIFEGDSKQVEELLNRK 152