Jatropha Genome Database

JcCA0265291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265291.10 - phase: 0 /pseudo/partial
         (165 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...   144   3e-35
AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE); ca...   143   6e-35
AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE ISOME...    84   4e-17

>AT2G21170.2 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 306

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/86 (80%), Positives = 76/86 (88%), Gaps = 1/86 (1%)

Query: 40  DVVVAPPFVYIDQVKSSLTDRIEISGQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSE 99
           DVVV+PPFVYIDQVKSSLTDRI+ISGQNSWV KGGAFTGEISVEQLKD+GCKWVILGHSE
Sbjct: 89  DVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSE 148

Query: 100 RRHIIGEKDEVQIG*KCFFEWFQGVN 125
           RRH+IGEKDE  IG K  +   +G+ 
Sbjct: 149 RRHVIGEKDEF-IGKKAAYALSEGLG 173


>AT2G21170.1 | Symbols: TIM | TIM (TRIOSEPHOSPHATE ISOMERASE);
           catalytic/ triose-phosphate isomerase |
           chr2:9071047-9073106 REVERSE
          Length = 315

 Score =  143 bits (360), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 69/86 (80%), Positives = 76/86 (88%), Gaps = 1/86 (1%)

Query: 40  DVVVAPPFVYIDQVKSSLTDRIEISGQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSE 99
           DVVV+PPFVYIDQVKSSLTDRI+ISGQNSWV KGGAFTGEISVEQLKD+GCKWVILGHSE
Sbjct: 98  DVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSE 157

Query: 100 RRHIIGEKDEVQIG*KCFFEWFQGVN 125
           RRH+IGEKDE  IG K  +   +G+ 
Sbjct: 158 RRHVIGEKDEF-IGKKAAYALSEGLG 182


>AT3G55440.1 | Symbols: ATCTIMC, TPI | TPI (TRIOSEPHOSPHATE
           ISOMERASE); triose-phosphate isomerase |
           chr3:20553794-20556078 FORWARD
          Length = 254

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 57/85 (67%), Gaps = 1/85 (1%)

Query: 40  DVVVAPPFVYIDQVKSSLTDRIEISGQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSE 99
           +VVV+PP+V++  VKS+L     ++ QN WV KGGAFTGE+S E L ++   WVILGHSE
Sbjct: 39  EVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSE 98

Query: 100 RRHIIGEKDEVQIG*KCFFEWFQGV 124
           RR I+ E  E  +G K  +   QG+
Sbjct: 99  RRAILNESSEF-VGDKVAYALAQGL 122