Jatropha Genome Database

JcCA0264961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264961.10 - phase: 2 /TE/partial
         (240 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | PKL (PICKLE)...    66   2e-11
AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP...    59   2e-09
AT4G31900.1 | Symbols:  | chromatin remodeling factor, putative ...    49   2e-06

>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | PKL (PICKLE);
           ATPase/ DNA binding / DNA helicase |
           chr2:10714411-10723763 FORWARD
          Length = 1384

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 109/243 (44%), Gaps = 29/243 (11%)

Query: 7   CQRSYHLSCLNPPLVTAPPGVWHCTFCVEKKMNMGVHSVSKGVESVWAVREVASDNEGKQ 66
           C  ++H  CL PPL  A    W C  CV   +N     +   +    +  + +SD E K 
Sbjct: 67  CTYAFHAKCLVPPLKDASVENWRCPECV-SPLNEIDKILDCEMRPTKSSEQGSSDAEPKP 125

Query: 67  KH-KEYLVKHQGLAHVHNLWIPEKELLL------EAPTRVAKFNRRSQA--------TSW 111
              K+YLVK +GL+++H  W+PEKE            TRV  F+R+ ++         + 
Sbjct: 126 IFVKQYLVKWKGLSYLHCSWVPEKEFQKAYKSNHRLKTRVNNFHRQMESFNNSEDDFVAI 185

Query: 112 KTEWSIPQRLLQKRQLSFSKHRTNGWLVKWTGLSYDHATWELENASFLTSPEARKLIQDY 171
           + EW+   R+L  R+    +     +LVK+  LSYD   WE E+       E    IQ +
Sbjct: 186 RPEWTTVDRILACRE----EDGELEYLVKYKELSYDECYWESESDISTFQNE----IQRF 237

Query: 172 EDGHAKAER-KDYENCHDKADKMQSLSQANELSSGDSPGAYNHYLKYVNKLREHWYKGHN 230
           +D +++  R KD ++  +  D  Q      E   G     + + L+ +N LR  W K  +
Sbjct: 238 KDVNSRTRRSKDVDHKRNPRD-FQQFDHTPEFLKG---LLHPYQLEGLNFLRFSWSKQTH 293

Query: 231 AIV 233
            I+
Sbjct: 294 VIL 296


>AT5G44800.1 | Symbols: CHR4 | CHR4 (CHROMATIN REMODELING 4); ATP
           binding / DNA binding / chromatin binding / helicase/
           nucleic acid binding / protein binding / zinc ion
           binding | chr5:18083659-18092162 REVERSE
          Length = 2242

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 81/180 (45%), Gaps = 13/180 (7%)

Query: 59  ASDNEGKQKHKEYLVKHQGLAHVHNLWIPEKELLLEAPTRVAKFNRR---SQATSWKTEW 115
            SD  G+    E+LVK    +++HN WI E EL   A  ++  +  +   +     + +W
Sbjct: 541 TSDLIGETVSYEFLVKWVDKSNIHNTWISEAELKGLAKRKLENYKAKYGTAVINICEDKW 600

Query: 116 SIPQRLLQKRQLSFSKHRTNGWLVKWTGLSYDHATWE-LENASFLTSPEARKLIQDYEDG 174
             PQR++    L  SK       VKWTGL+YD  TWE LE      S     L   YE  
Sbjct: 601 KQPQRIVA---LRVSKEGNQEAYVKWTGLAYDECTWESLEEPILKHSSHLIDLFHQYE-- 655

Query: 175 HAKAERKDYENCHDKADKMQSLS-QANELSSGDSPGAYNHYLKYVNKLREHWYKGHNAIV 233
               ER    N   +  ++ +L+ Q  EL  G     + H L+ +N LR  W+K  N I+
Sbjct: 656 QKTLERNSKGNPTRERGEVVTLTEQPQELRGG---ALFAHQLEALNWLRRCWHKSKNVIL 712


>AT4G31900.1 | Symbols:  | chromatin remodeling factor, putative |
           chr4:15431528-15438443 FORWARD
          Length = 1202

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 29/183 (15%)

Query: 69  KEYLVKHQGLAHVHNLWIPEKELL--------LEAPTRVAKFNRRSQA----------TS 110
           K+YLVK +GL+++H  W+PE+E          L+   RV +FN                +
Sbjct: 77  KQYLVKWKGLSYLHCSWVPEQEFEKAYKSHPHLKLKLRVTRFNAAMDVFIAENGAHEFIA 136

Query: 111 WKTEWSIPQRLLQKRQLSFSKHRTNGWLVKWTGLSYDHATWELENASFLTSPEARKLIQD 170
            + EW    R++  R+    +     +LVK+  LSY ++ WE E+       + +  IQ 
Sbjct: 137 IRPEWKTVDRIIACREGDDGEE----YLVKYKELSYRNSYWESES----DISDFQNEIQR 188

Query: 171 YEDGHAKAERKDYENCHDKADKMQSLSQANELSSGDSPGAYNHYLKYVNKLREHWYKGHN 230
           ++D ++ + R  Y       ++ +      E  +G     + + L+ +N LR  W K  N
Sbjct: 189 FKDINSSSRRDKYVENERNREEFKQFDLTPEFLTG---TLHTYQLEGLNFLRYSWSKKTN 245

Query: 231 AIV 233
            I+
Sbjct: 246 VIL 248