Jatropha Genome Database
- JcCA0264441.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0264441.10 - phase: 2 /pseudo/partial
(203 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G14240.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 100 6e-22
AT4G14240.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 100 6e-22
AT4G14230.1 | Symbols: | CBS domain-containing protein-related ... 94 5e-20
AT1G03270.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 86 2e-17
AT5G52790.1 | Symbols: | CBS domain-containing protein-related ... 49 3e-06
AT1G47330.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 48 5e-06
>AT4G14240.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF21
(InterPro:IPR002550), Cystathionine beta-synthase, core
(InterPro:IPR000644); BEST Arabidopsis thaliana protein
match is: CBS domain-containing protein-related
(TAIR:AT4G14230.1); Has 6770 Blast hits to 6657 proteins
in 1347 species: Archae - 62; Bacteria - 4461; Metazoa -
254; Fungi - 179; Plants - 121; Viruses - 0; Other
Eukaryotes - 1693 (source: NCBI BLink). |
chr4:8204712-8207273 REVERSE
Length = 494
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 28 RVTSDMPLYDILNEFQKGXXXXXXXXXXXXX-----XXXXXXXXXXXGDSELNTPLLNKH 82
RV +DMPLYDILNEFQKG DS+L PLL K
Sbjct: 303 RVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKVPPSTLLEEHTDESNDSDLTAPLLLKR 362
Query: 83 DDKSESVIIDIEKAARPTTIKENLTLEPNGVATNMMPHLSXXXXXXXXXXXXTLEDVFEE 142
+ ++VI+ I+KA + + N + P+G + H S TLEDVFEE
Sbjct: 363 EGNHDNVIVTIDKANGQSFFQNNES-GPHGFS-----HTSEAIEDGEVIGIITLEDVFEE 416
Query: 143 LLQEEIVDETDVYVDVHKRIXXXXXXXXXXXXXXPSNRRLSGQKPAGGQGKQNNIPKKSG 202
LLQEEIVDETD YVDVHKRI PS+R+L QK GGQ KQ K G
Sbjct: 417 LLQEEIVDETDEYVDVHKRIRVAAAAAASSIARAPSSRKLLAQKGTGGQNKQGQTNKVPG 476
>AT4G14240.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF21
(InterPro:IPR002550), Cystathionine beta-synthase, core
(InterPro:IPR000644); BEST Arabidopsis thaliana protein
match is: CBS domain-containing protein-related
(TAIR:AT4G14230.1); Has 6735 Blast hits to 6622 proteins
in 1349 species: Archae - 62; Bacteria - 4446; Metazoa -
254; Fungi - 179; Plants - 121; Viruses - 0; Other
Eukaryotes - 1673 (source: NCBI BLink). |
chr4:8204712-8207273 REVERSE
Length = 485
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 28 RVTSDMPLYDILNEFQKGXXXXXXXXXXXXX-----XXXXXXXXXXXGDSELNTPLLNKH 82
RV +DMPLYDILNEFQKG DS+L PLL K
Sbjct: 294 RVPADMPLYDILNEFQKGSSHMAAVVKVKGKSKVPPSTLLEEHTDESNDSDLTAPLLLKR 353
Query: 83 DDKSESVIIDIEKAARPTTIKENLTLEPNGVATNMMPHLSXXXXXXXXXXXXTLEDVFEE 142
+ ++VI+ I+KA + + N + P+G + H S TLEDVFEE
Sbjct: 354 EGNHDNVIVTIDKANGQSFFQNNES-GPHGFS-----HTSEAIEDGEVIGIITLEDVFEE 407
Query: 143 LLQEEIVDETDVYVDVHKRIXXXXXXXXXXXXXXPSNRRLSGQKPAGGQGKQNNIPKKSG 202
LLQEEIVDETD YVDVHKRI PS+R+L QK GGQ KQ K G
Sbjct: 408 LLQEEIVDETDEYVDVHKRIRVAAAAAASSIARAPSSRKLLAQKGTGGQNKQGQTNKVPG 467
>AT4G14230.1 | Symbols: | CBS domain-containing protein-related |
chr4:8200850-8203130 REVERSE
Length = 495
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 77/174 (44%), Gaps = 19/174 (10%)
Query: 28 RVTSDMPLYDILNEFQKGXXXXXXXXXXXXXXX---------XXXXXXXXXGDSELNTPL 78
RV ++MPLYDILNEFQKG +SEL PL
Sbjct: 302 RVPANMPLYDILNEFQKGSSHMAAVVKVKGKSKGHPSTLHEENSGESNVSSNNSELTAPL 361
Query: 79 LNKHDDKSESVIIDIEKAARPTTIKENLTLEPNGVATNMMPHLSXXXXXXXXXXXXTLED 138
L K + +SVI+ I+KA + I E H S TLED
Sbjct: 362 LLKREGNHDSVIVRIDKANGQSFISE--------AGRQGFSHTSEEIEDGDVIGIITLED 413
Query: 139 VFEELLQEEIVDETDVYVDVHKRI--XXXXXXXXXXXXXXPSNRRLSGQKPAGG 190
VFEELLQEEIVDETD Y+DVHKRI PS RRL G K +GG
Sbjct: 414 VFEELLQEEIVDETDEYIDVHKRIRVATVAAVAISSLARAPSGRRLLGPKGSGG 467
>AT1G03270.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF21
(InterPro:IPR002550), Cystathionine beta-synthase, core
(InterPro:IPR000644); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G14240.1); Has 6515
Blast hits to 6357 proteins in 1347 species: Archae -
64; Bacteria - 4189; Metazoa - 291; Fungi - 188; Plants
- 123; Viruses - 0; Other Eukaryotes - 1660 (source:
NCBI BLink). | chr1:799191-802436 FORWARD
Length = 499
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 28 RVTSDMPLYDILNEFQKGXXXXXXXXXXXXXXXXXXXXXXXXGD-----------SELNT 76
RV SDMPLYDILNEFQKG G+ S L
Sbjct: 301 RVPSDMPLYDILNEFQKGSSHMAAVVKVKDKDKKNNMQLLSNGETPKENMKFYQSSNLTA 360
Query: 77 PLLNKHDDKSESVIIDIEKAARPTTIK-ENLTLEPNGVATNMMPHLSXXXXXXXXXXXXT 135
PLL KH+ S V++DI+K P +K + NG T +P L T
Sbjct: 361 PLL-KHE--SHDVVVDIDKV--PKHVKNRGRNFQQNGTVTRDLPCLLEDNEDAEVIGIIT 415
Query: 136 LEDVFEELLQEEIVDETDVYVDVHK 160
LEDVFEELLQ EIVDETDVY+DVHK
Sbjct: 416 LEDVFEELLQAEIVDETDVYIDVHK 440
>AT5G52790.1 | Symbols: | CBS domain-containing protein-related |
chr5:21391740-21394327 REVERSE
Length = 500
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 25/28 (89%)
Query: 135 TLEDVFEELLQEEIVDETDVYVDVHKRI 162
TLEDV EEL+QEEI DETD YV++HKRI
Sbjct: 370 TLEDVMEELIQEEIYDETDQYVELHKRI 397
>AT1G47330.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF21
(InterPro:IPR002550), Cystathionine beta-synthase, core
(InterPro:IPR000644); BEST Arabidopsis thaliana protein
match is: CBS domain-containing protein
(TAIR:AT2G14520.1); Has 6970 Blast hits to 6717 proteins
in 1361 species: Archae - 64; Bacteria - 4382; Metazoa -
390; Fungi - 183; Plants - 125; Viruses - 0; Other
Eukaryotes - 1826 (source: NCBI BLink). |
chr1:17351149-17353739 FORWARD
Length = 527
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 135 TLEDVFEELLQEEIVDETDVYVDVHKRI 162
T+EDV EELLQEEI+DETD YV++H RI
Sbjct: 419 TMEDVIEELLQEEILDETDEYVNIHNRI 446