Jatropha Genome Database

JcCA0264101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264101.20 - phase: 0 /pseudo/partial
         (309 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | NRAMP1 (NATURAL...   270   1e-72
AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP6; inorganic anio...   260   9e-70
AT1G47240.1 | Symbols: NRAMP2, ATNRAMP2 | NRAMP2; inorganic anio...   114   8e-26
AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | NRAMP3 (NATURAL RESIST...   112   2e-25
AT5G67330.1 | Symbols: ATNRAMP4, NRAMP4 | ATNRAMP4; inorganic an...   111   5e-25
AT4G18790.1 | Symbols: NRAMP5, ATNRAMP5 | NRAMP5; inorganic anio...   110   8e-25

>AT1G80830.1 | Symbols: NRAMP1, PMIT1, ATNRAMP1 | NRAMP1 (NATURAL
           RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1); inorganic
           anion transmembrane transporter/ manganese ion
           transmembrane transporter/ metal ion transmembrane
           transporter | chr1:30373066-30375644 REVERSE
          Length = 532

 Score =  270 bits (689), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/266 (50%), Positives = 184/266 (69%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           +++ACRF+LIESG AL VAFLIN+S+ISV+  VC + NL+P D   C DL+LN ASFLL+
Sbjct: 260 IKEACRFYLIESGLALMVAFLINVSVISVSGAVCNAPNLSPEDRANCEDLDLNKASFLLR 319

Query: 87  NVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIAIAPXX 146
           NV+G+ SS ++AIALLASGQSSTITGTYAGQY+MQGFLDL+++ W RNL+TRC+AI P  
Sbjct: 320 NVVGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWLRNLLTRCLAIIPSL 379

Query: 147 XXXXXXXXXXXXXXXXXXXMILSFELPFALIPLLKFSSGSTKMGPYKNSIYVIVISWTLG 206
                              MILSFELPFAL+PLLKF+S  TKMG + N + +  ++W +G
Sbjct: 380 IVALIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSCKTKMGSHVNPMAITALTWVIG 439

Query: 207 LMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYLTFRKDTVVTY 266
            +I+GINIYYL + F+  LIH+++  +  VF GI+ F  +A+Y+ ++ YL FRK+ V T 
Sbjct: 440 GLIMGINIYYLVSSFIKLLIHSHMKLILVVFCGILGFAGIALYLAAIAYLVFRKNRVATS 499

Query: 267 IEPVNDEQIGQATMESGLKNLEILWR 292
           +    D Q  +      + N+++  R
Sbjct: 500 LLISRDSQNVETLPRQDIVNMQLPCR 525


>AT1G15960.1 | Symbols: NRAMP6, ATNRAMP6 | NRAMP6; inorganic anion
           transmembrane transporter/ metal ion transmembrane
           transporter | chr1:5482202-5485066 REVERSE
          Length = 527

 Score =  260 bits (664), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 128/268 (47%), Positives = 184/268 (68%), Gaps = 2/268 (0%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           +++ACR++LIESG AL VAFLIN+S+ISV+  VC + +L+P D   C DL+LN ASFLL+
Sbjct: 252 IKEACRYYLIESGLALMVAFLINVSVISVSGAVCNASDLSPEDRASCQDLDLNKASFLLR 311

Query: 87  NVLGRSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIAIAPXX 146
           NV+G+ SS ++AIALLASGQSSTITGTYAGQY+MQGFLDL+++ W RN +TRC+AI P  
Sbjct: 312 NVVGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWLRNFLTRCLAIIPSL 371

Query: 147 XXXXXXXXXXXXXXXXXXXMILSFELPFALIPLLKFSSGSTKMGPYKNSIYVIVISWTLG 206
                              MILSFELPFAL+PLLKF+S  TKMG + NS+ +  ++W +G
Sbjct: 372 IVALIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSSKTKMGSHANSLVISSVTWIIG 431

Query: 207 LMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYLTFRK--DTVV 264
            +I+GINIYYL + F+  L+H+++  V  VF+G++ F  +A Y+ ++ YL  RK  ++  
Sbjct: 432 GLIMGINIYYLVSSFIKLLLHSHMNLVAIVFLGVLGFSGIATYLAAISYLVLRKNRESSS 491

Query: 265 TYIEPVNDEQIGQATMESGLKNLEILWR 292
           T+    ++ Q  +      + N+++  R
Sbjct: 492 THFLDFSNSQTEETLPREDIANMQLPNR 519


>AT1G47240.1 | Symbols: NRAMP2, ATNRAMP2 | NRAMP2; inorganic anion
           transmembrane transporter/ metal ion transmembrane
           transporter | chr1:17309043-17311308 REVERSE
          Length = 530

 Score =  114 bits (285), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 121/237 (51%), Gaps = 24/237 (10%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPG--DVDRCSDLNLNSASFL 84
           +Q+A  ++LIES  ALF++F+INL + +V          A G    ++ +++ L +A   
Sbjct: 284 VQEALNYYLIESSVALFISFMINLFVTTV---------FAKGFYGTEKANNIGLVNAGQY 334

Query: 85  LQNVLGRSSSTI---YAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIA 141
           LQ   G     I   + I LLA+GQSSTITGTYAGQ+IM GFL+L++KKW R ++TR  A
Sbjct: 335 LQEKFGGGLLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRAVITRSCA 394

Query: 142 IAPXXXXXXXXXXXXXXXXXXXXXM--ILSFELPFALIPLLKFSSGSTKMGPYKNSIYVI 199
           I P                     +  + S ++PFAL+PLL   S    MG +K    + 
Sbjct: 395 IVPTMIVAIVFNTSEASLDVLNEWLNVLQSVQIPFALLPLLTLVSKEEIMGDFKIGPILQ 454

Query: 200 VISWTLGLMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYL 256
            I+WT+  +++ IN Y L   FV         +V     G+ V      YI  ++YL
Sbjct: 455 RIAWTVAALVMIINGYLLLDFFVS--------EVDGFLFGVTVCVWTTAYIAFIVYL 503


>AT2G23150.1 | Symbols: NRAMP3, ATNRAMP3 | NRAMP3 (NATURAL
           RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3); inorganic
           anion transmembrane transporter/ manganese ion
           transmembrane transporter/ metal ion transmembrane
           transporter | chr2:9856422-9858565 REVERSE
          Length = 509

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/196 (39%), Positives = 105/196 (53%), Gaps = 12/196 (6%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           +Q+A  ++ IES  ALF++FLINL + +V A    + +LA       + + L +A   LQ
Sbjct: 272 VQEALNYYTIESTIALFISFLINLFVTTVFAKGFYNTDLA-------NSIGLVNAGQYLQ 324

Query: 87  NVLGRSSSTI---YAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIAIA 143
              G     I   +AI LLA+GQSSTITGTYAGQ+IM GFL+ KMKKW R L+TR  AI 
Sbjct: 325 EKYGGGVFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNFKMKKWLRALITRSCAII 384

Query: 144 PXXXXXXXXXXXXXXXXXXXXXM--ILSFELPFALIPLLKFSSGSTKMGPYKNSIYVIVI 201
           P                     +  + S ++PFALIPLL   S    MG +K       I
Sbjct: 385 PTIIVALVFDSSEATLDVLNEWLNVLQSIQIPFALIPLLCLVSKEQIMGSFKIGPLYKTI 444

Query: 202 SWTLGLMIIGINIYYL 217
           +W +  ++I IN Y L
Sbjct: 445 AWLVAALVIMINGYLL 460


>AT5G67330.1 | Symbols: ATNRAMP4, NRAMP4 | ATNRAMP4; inorganic anion
           transmembrane transporter/ manganese ion transmembrane
           transporter/ metal ion transmembrane transporter |
           chr5:26861822-26863580 FORWARD
          Length = 512

 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 131/260 (50%), Gaps = 27/260 (10%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           +++A +++ IES  AL V+F+IN+ + +V A       +A         + L +A   LQ
Sbjct: 268 VKEALKYYSIESTGALAVSFIINVFVTTVFAKSFYGTEIA-------DTIGLANAGQYLQ 320

Query: 87  NVLGRSSSTI---YAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIAIA 143
           +  G     I   +AI +LA+GQSSTITGTYAGQ+IM GFL+LKMKKW R L+TR  AI 
Sbjct: 321 DKYGGGFFPILYIWAIGVLAAGQSSTITGTYAGQFIMGGFLNLKMKKWVRALITRSCAII 380

Query: 144 PXXXXXXXXXXXXXXXXXXXXXM--ILSFELPFALIPLLKFSSGSTKMGPYKNSIYVIVI 201
           P                     +  + S ++PFA+IPLL   S    MG +K    V  I
Sbjct: 381 PTMIVALVFDSSDSMLDELNEWLNVLQSVQIPFAVIPLLCLVSNEQIMGSFKIQPLVQTI 440

Query: 202 SWTLGLMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYLTFRKD 261
           SW +  ++I IN  YL   F      N +     + + +I+F +   Y++ V+YL  R  
Sbjct: 441 SWIVAALVIAIN-GYLMVDFFSGAATNLI-----LLVPVIIFAIA--YVVFVLYLISRGL 492

Query: 262 T-------VVTYIEPVNDEQ 274
           T         ++ EP  D++
Sbjct: 493 TYTPWQLVASSHKEPQRDDE 512


>AT4G18790.1 | Symbols: NRAMP5, ATNRAMP5 | NRAMP5; inorganic anion
           transmembrane transporter/ metal ion transmembrane
           transporter | chr4:10317785-10319660 REVERSE
          Length = 530

 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 119/235 (50%), Gaps = 20/235 (8%)

Query: 27  LQDACRFFLIESGFALFVAFLINLSIISVTATVCLSKNLAPGDVDRCSDLNLNSASFLLQ 86
           +Q+A  ++ IES  ALFV+F+INL + +V A              +   + L +A + LQ
Sbjct: 286 VQEALNYYTIESSAALFVSFMINLFVTAVFAKGFYGTK-------QADSIGLVNAGYYLQ 338

Query: 87  NVLGRSSSTI---YAIALLASGQSSTITGTYAGQYIMQGFLDLKMKKWTRNLMTRCIAIA 143
              G     I   + I LLA+GQSSTITGTYAGQ+IM+GFLDL+M++W    +TR  AI 
Sbjct: 339 EKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMEGFLDLQMEQWLSAFITRSFAIV 398

Query: 144 PXXXXXXXXXXXXXXXXXXXXXM--ILSFELPFALIPLLKFSSGSTKMGPYKNSIYVIVI 201
           P                     +  + S ++PFA+IPLL   S    MG +K    +  +
Sbjct: 399 PTMFVAIMFNTSEGSLDVLNEWLNILQSMQIPFAVIPLLTMVSNEHIMGVFKIGPSLEKL 458

Query: 202 SWTLGLMIIGINIYYLSTGFVDWLIHNNLPKVGNVFIGIIVFPLMAIYIISVIYL 256
           +WT+ + ++ IN Y L   F        + +V    +G +VF  +  YI  +IYL
Sbjct: 459 AWTVAVFVMMINGYLLLDFF--------MAEVEGFLVGFLVFGGVVGYISFIIYL 505