Jatropha Genome Database

JcCA0264101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264101.10 + phase: 0 /partial
         (262 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21700.1 | Symbols: ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE N...   176   2e-44
AT4G34430.3 | Symbols: CHB3, ATSWI3D | CHB3; DNA binding / trans...    59   4e-09
AT4G34430.2 | Symbols: CHB3, ATSWI3D | CHB3; DNA binding / trans...    59   4e-09
AT4G34430.1 | Symbols: CHB3, ATSWI3D | CHB3; DNA binding / trans...    59   4e-09
AT4G34430.4 | Symbols: CHB3, ATSWI3D | CHB3; DNA binding / trans...    54   9e-08

>AT1G21700.1 | Symbols: ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE
           NONFERMENTING 3C); DNA binding | chr1:7620156-7623978
           REVERSE
          Length = 807

 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/284 (44%), Positives = 150/284 (52%), Gaps = 41/284 (14%)

Query: 1   VAFLASAVGPRVXXXXXXXXXXXXXEDNRMNSERLHSREGSFHGEVANSIQQKEG----- 55
           VAFLASAVGPRV             ED+RM SE +  +E S    +    QQ++G     
Sbjct: 507 VAFLASAVGPRVAASCAHESLSVLSEDDRMKSEGMQGKEASL---LDGENQQQDGAHKTS 563

Query: 56  -QNEAEG-GPVSXXXXXXXXXXXXXXXXXXXXXXXDHEEREIQRLSANIINHQLKRLELK 113
            QN AE   P+                        DHEEREIQRLSANI+NHQLKR+ELK
Sbjct: 564 SQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEEREIQRLSANIVNHQLKRMELK 623

Query: 114 LKQFAEVETFLMRECEQVEKTRQRFAAERARMMSTRIG-PAGSTSQM-NLAGVGPSMVNN 171
           LKQFAE+ET LM+ECEQVEKTRQRF+AERARM+S R G P G + Q  NL G+  S   N
Sbjct: 624 LKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSPGGISPQTNNLQGMSLSTGGN 683

Query: 172 NISS---------NRQQVMPPSSQPNISGYGNNQQVHPHVSFMQRGQQQPM--------- 213
           NI+S                PS  P   G+ NN QV   + FM R QQQ           
Sbjct: 684 NINSLMHQQHQQQQASATSQPSIIP---GFSNNPQVQAQMHFMARQQQQQQQQQQQQQQA 740

Query: 214 FPLGPRLPLAAIQPS--SSAPSNVMF------NASGSSQPSLNQ 249
           F  GPRLPL AIQ +  S+A  NVMF      N + +   S+NQ
Sbjct: 741 FSFGPRLPLNAIQTNAGSTASPNVMFGNNQLNNPAAAGAASINQ 784


>AT4G34430.3 | Symbols: CHB3, ATSWI3D | CHB3; DNA binding /
           transcription factor/ zinc ion binding |
           chr4:16461069-16464993 FORWARD
          Length = 983

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 91  EEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERARMMSTRI 150
           EE +I++LS ++I  QL +LE KL  F E E+  MR  EQ+E++RQR   ERA++++ R+
Sbjct: 851 EEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARL 910

Query: 151 G-PAGSTSQMNL 161
           G P   +S+ +L
Sbjct: 911 GVPPSMSSKASL 922


>AT4G34430.2 | Symbols: CHB3, ATSWI3D | CHB3; DNA binding /
           transcription factor/ zinc ion binding |
           chr4:16461069-16464993 FORWARD
          Length = 985

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 91  EEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERARMMSTRI 150
           EE +I++LS ++I  QL +LE KL  F E E+  MR  EQ+E++RQR   ERA++++ R+
Sbjct: 853 EEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARL 912

Query: 151 G-PAGSTSQMNL 161
           G P   +S+ +L
Sbjct: 913 GVPPSMSSKASL 924


>AT4G34430.1 | Symbols: CHB3, ATSWI3D | CHB3; DNA binding /
           transcription factor/ zinc ion binding |
           chr4:16461069-16464993 FORWARD
          Length = 985

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 91  EEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERARMMSTRI 150
           EE +I++LS ++I  QL +LE KL  F E E+  MR  EQ+E++RQR   ERA++++ R+
Sbjct: 853 EEDQIRQLSGSLIEKQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAARL 912

Query: 151 G-PAGSTSQMNL 161
           G P   +S+ +L
Sbjct: 913 GVPPSMSSKASL 924


>AT4G34430.4 | Symbols: CHB3, ATSWI3D | CHB3; DNA binding /
           transcription factor/ zinc ion binding |
           chr4:16461069-16464993 FORWARD
          Length = 986

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 91  EEREIQRLSANII-NHQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERARMMSTR 149
           EE +I++LS ++I   QL +LE KL  F E E+  MR  EQ+E++RQR   ERA++++ R
Sbjct: 853 EEDQIRQLSGSLIEKQQLHKLEAKLSIFNEAESLTMRVREQLERSRQRLYHERAQIIAAR 912

Query: 150 IG-PAGSTSQMNL 161
           +G P   +S+ +L
Sbjct: 913 LGVPPSMSSKASL 925