Jatropha Genome Database

JcCA0263681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0263681.10 - phase: 0 /TE/partial
         (968 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1 | Symbols: ORF158 | hypothetical protein | chrM:2359...   111   2e-24

>ATMG00860.1 | Symbols: ORF158 | hypothetical protein |
           chrM:235916-236392 FORWARD
          Length = 158

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 83/134 (61%), Gaps = 5/134 (3%)

Query: 302 LQYLGRVLDALQKNELYINLKKCSFMTERILFLGY--IVSTKGIHVDDRKIEAIRNWPSP 359
           + +LG VL   ++++ Y N KKC+F   +I +LG+  I+S +G+  D  K+EA+  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 360 KNVTEVCSFHGLATFYMWFIKNFSSIVAPITDCLKKEKVRQFVWIEAANRSFEEIKDKLT 419
           KN TE+  F GL  +Y  F+KN+  IV P+T+ LKK  ++   W E A  +F+ +K  +T
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLK---WTEMAALAFKALKGAVT 117

Query: 420 SAPILALPDFDKLF 433
           + P+LALPD    F
Sbjct: 118 TLPVLALPDLKLPF 131