Jatropha Genome Database

JcCA0262351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262351.10 - phase: 0 
         (165 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07130.1 | Symbols: STN1, ATSTN1 | STN1; nucleic acid binding...   174   3e-44

>AT1G07130.1 | Symbols: STN1, ATSTN1 | STN1; nucleic acid binding |
           chr1:2187928-2188410 FORWARD
          Length = 160

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/160 (53%), Positives = 108/160 (67%), Gaps = 4/160 (2%)

Query: 1   MDQKYQNTHVKLLAFDLLSLTQLPXXXXXXXXXXXRLGKSFSRAEILGIVTSREHKPNKF 60
           MD+  Q+TH KL+A D+  LTQ P             G   SR EI+G + SR+  P KF
Sbjct: 1   MDRSLQSTHAKLVARDIQRLTQSPTESNSFSLLG---GACVSRVEIVGTIVSRDLTP-KF 56

Query: 61  LKFTIDDGTGCVSCVLWLNQLTSPYFSRRSPPDVRLIADMASHFASEIKIGVVACVRGRI 120
           LKF +DDGTGCV+CV+WLNQLTS YFSR  P  + L+A  A   A++I+IG VA VRGR+
Sbjct: 57  LKFGVDDGTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRV 116

Query: 121 TSYRGAVQITVSDVVIERDPNAEILHWLNCIRLARNCYDV 160
            SYRG +QIT +  V ERDPNAEILHWL C++L ++CY V
Sbjct: 117 GSYRGVMQITANVAVAERDPNAEILHWLECLKLGQSCYRV 156