Jatropha Genome Database

JcCA0262331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262331.10 - phase: 0 
         (78 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28290.1 | Symbols:  | unknown protein | chr4:14012032-140124...    50   4e-07

>AT4G28290.1 | Symbols:  | unknown protein |
          chr4:14012032-14012464 REVERSE
          Length = 80

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 33 PCSNEGSTPANGRHRVPGGCASLD-KEKFAPRFDGLRFIETLITAHR 78
          P SN     A  + R   G +     EKFAPRFDGLRFIETL+TAHR
Sbjct: 34 PESNLSRQEAKEKQRKKKGSSEDGGDEKFAPRFDGLRFIETLVTAHR 80