Jatropha Genome Database

JcCA0261291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261291.10 - phase: 1 /pseudo/partial
         (68 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09775.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    46   6e-06

>AT4G09775.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: reverse transcriptase-related (TAIR:AT2G02650.1);
           Has 113 Blast hits to 113 proteins in 4 species: Archae
           - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr4:6156629-6157054 FORWARD
          Length = 141

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINA-CQSLSRGVTDVKLAEALSF 60
           WS PP G  KCN D+  +         W++RD +G VI++ C  L +  + ++ AEAL F
Sbjct: 62  WSPPPEGYLKCNFDSGYVQGRDYTSTCWIIRDSNGHVIHSGCAKLQQSYSALQ-AEALGF 120

Query: 61  RQAL 64
             AL
Sbjct: 121 LHAL 124