Jatropha Genome Database

JcCA0261271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261271.10 + phase: 0 
         (134 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64550.1 | Symbols: ATGCN3 | ATGCN3; transporter | chr1:23968...    88   2e-18

>AT1G64550.1 | Symbols: ATGCN3 | ATGCN3; transporter |
           chr1:23968850-23973369 FORWARD
          Length = 715

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/103 (48%), Positives = 54/103 (52%), Gaps = 16/103 (15%)

Query: 1   MTEVASSVVHEVLGPRVQDVDQPIVDYIINVXXXXXXXXXXXXXXXXXXXXXXXXXXXCV 60
           MTEVASSVV+EVLG R QDVD+PI+DYIINV                           CV
Sbjct: 1   MTEVASSVVYEVLGRRAQDVDEPIMDYIINVLADEDFDFGEEGEGAFDAVGELLVAAECV 60

Query: 61  SDFEECRL----------------QKPTVRSLTAPIRMNDGMD 87
           SDFEECRL                  PTVRSL  P+RMNDGMD
Sbjct: 61  SDFEECRLVCSKLSDKFGKHGLVKPTPTVRSLAMPVRMNDGMD 103