Jatropha Genome Database

JcCA0261101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261101.10 - phase: 0 /partial
         (475 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18525.1 | Symbols:  | ATP binding / protein kinase/ protein ...   555   e-158
AT4G02660.1 | Symbols:  | WD-40 repeat family protein / beige-re...    64   2e-10
AT2G45540.1 | Symbols:  | WD-40 repeat family protein / beige-re...    64   3e-10
AT1G03060.1 | Symbols:  | WD-40 repeat family protein / beige-re...    63   5e-10
AT1G58230.1 | Symbols:  | WD-40 repeat family protein / beige-re...    61   2e-09

>AT5G18525.1 | Symbols:  | ATP binding / protein kinase/ protein
           serine/threonine kinase/ protein tyrosine kinase |
           chr5:6146932-6153658 REVERSE
          Length = 1639

 Score =  555 bits (1429), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/476 (61%), Positives = 350/476 (73%), Gaps = 6/476 (1%)

Query: 1   MANLAVPSWASSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVMLPS 60
           M++LAVP WASSP+EFI+LHRDALES  VS  IHHWIDITFGYKMSG AA+ AKNVML S
Sbjct: 499 MSDLAVPPWASSPDEFIRLHRDALESPHVSSLIHHWIDITFGYKMSGHAAITAKNVMLSS 558

Query: 61  SEPTMPRPVGRRQLFTRPHPVRLGSLRKKHSATNTSAANRCLSSTVESE-TPLLSETAYL 119
           SEPT+PR VGRRQLF RPHPVRLG  R+K  + N    +      V+++ + +L    YL
Sbjct: 559 SEPTVPRSVGRRQLFFRPHPVRLGFSREKEQSRNELEMHTFHGFGVDNKRSVILLADEYL 618

Query: 120 QALEETSGFSEHAGHLSPQYYYDAENLVKDMFSGDESVNESIEKSVSKPLEIGKNYGLQC 179
           +  EE S FS+HA HL P+Y+   ENLV+       S +E+ +K  +      KN GL  
Sbjct: 619 EETEEASAFSDHATHLCPKYHL-RENLVESPLH--VSYSENTKKVNTSLPGTSKNKGLSS 675

Query: 180 NINLSYLLEHMEVEVENTMGYQELQHWRRQPSYSKNSKEDFSKDIFAIGSVLAELYLKRP 239
            I+L+YLLEHMEV  E +   QEL  WR Q   + N  +D + DIF+IG VLAELYL +P
Sbjct: 676 RISLNYLLEHMEVRDEASTELQELLQWR-QDFCTGNISKDIAGDIFSIGCVLAELYLMKP 734

Query: 240 LFNSTSLATYIERDILPEFFQELPPHAKVLVEACIQKDWRRRPSAKSLLESPYFPTTVKS 299
           LFNS SLATY+E   LPE  +ELPP  +V+VEACI++DWRRRPSAKSLL+SPYF  TV+S
Sbjct: 735 LFNSVSLATYLEGGDLPELIKELPPPTQVIVEACIEQDWRRRPSAKSLLDSPYFSATVRS 794

Query: 300 SYMFIAPLQLIASNGSRLQYAANFAKQGALKAMGSFAAEMCLPYCIPLVVNPQSDTEAEW 359
           +++F APLQL+A   +RL YAA+FAKQG LK MG+F AEMC  YC+PLV  P S+ E E 
Sbjct: 795 AHLFAAPLQLLAKGQTRLCYAASFAKQGVLKVMGTFVAEMCAVYCLPLVTTPLSEDECEL 854

Query: 360 AYTLLKEFIKCLTPKAVKMAVLPAIQKI-LQARYSHLKVSLLQGSFVQEMWNLIGKQVYL 418
           AY LLKEF K LTP AV+  VLP+IQKI L   YSHLKVSLLQ SFV+E+WN IGK+VYL
Sbjct: 855 AYVLLKEFTKSLTPMAVQRLVLPSIQKILLTTGYSHLKVSLLQDSFVRELWNQIGKRVYL 914

Query: 419 ENIHPLVISNLHVAPHKSSAAVASVLLIGTSEELGVPITVHQTILPLIHCFGKGLC 474
           E IHPLVISNL+ +P K SA+ ASVLLIG+SEELG P+TVHQTILPLI  FGKG+C
Sbjct: 915 EMIHPLVISNLYNSPDKISASAASVLLIGSSEELGAPVTVHQTILPLISYFGKGIC 970


>AT4G02660.1 | Symbols:  | WD-40 repeat family protein / beige-related
            | chr4:1159667-1173791 REVERSE
          Length = 3471

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 21/103 (20%)

Query: 1    MANLAVPSWA-SSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVML- 58
            + ++ +P WA  S  EFI+ HR+ALES+ VS  +HHWID+ FG+K  G+AA  A NV   
Sbjct: 3086 VGDVILPPWARGSVREFIRKHREALESDYVSENLHHWIDLIFGHKQRGKAAENAVNVFYH 3145

Query: 59   ----------PSSEPTMPRPV-------GR--RQLFTRPHPVR 82
                        ++P M   +       G+  +QLF +PH  R
Sbjct: 3146 YTYEGNVDVDAVTDPAMKASILAQINHFGQTPKQLFQKPHVKR 3188


>AT2G45540.1 | Symbols:  | WD-40 repeat family protein / beige-related
            | chr2:18757881-18772229 REVERSE
          Length = 2946

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 4    LAVPSWASSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVML 58
            + +P WA +P +F+   R ALESE VS  +H WID+ FGYK  G+ A+ A NV  
Sbjct: 2411 VKLPPWAKNPVDFVHKQRRALESEHVSAHLHEWIDLIFGYKQRGKEAIMANNVFF 2465


>AT1G03060.1 | Symbols:  | WD-40 repeat family protein / beige-related
            | chr1:712971-726891 REVERSE
          Length = 3601

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 1    MANLAVPSWA-SSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVM 57
            + ++ +P WA  S  EFI  HR+ALES+ VS  +HHWID+ FGYK  G+AA  A NV 
Sbjct: 3142 VGDVFLPPWARGSVREFILKHREALESDYVSENLHHWIDLIFGYKQRGKAAEEAVNVF 3199


>AT1G58230.1 | Symbols:  | WD-40 repeat family protein /
           beige-related | chr1:21573706-21578865 FORWARD
          Length = 1280

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 1   MANLAVPSWA-SSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVM 57
           +  + +P WA  SPE FI  +R+ALESE VS  +H WID+ FG+K  G+ AV A N+ 
Sbjct: 800 LGEVCLPPWAKGSPEMFIARNREALESEYVSSHLHDWIDLIFGHKQRGKPAVEAANIF 857