Jatropha Genome Database

JcCA0261081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261081.10 - phase: 0 /pseudo/partial
         (281 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26680.2 | Symbols:  | endonuclease, putative | chr5:9311882-...   308   2e-84
AT5G26680.1 | Symbols:  | endonuclease, putative | chr5:9311882-...   307   6e-84
AT3G28030.1 | Symbols: UVH3, UVR1 | UVH3 (ULTRAVIOLET HYPERSENSI...    78   7e-15
AT1G01880.1 | Symbols:  | DNA repair protein, putative | chr1:30...    63   3e-10
AT1G29630.2 | Symbols:  | DNA binding / catalytic/ nuclease | ch...    62   3e-10
AT1G18090.2 | Symbols:  | exonuclease, putative | chr1:6224539-6...    54   8e-08
AT1G18090.1 | Symbols:  | exonuclease, putative | chr1:6224539-6...    54   8e-08

>AT5G26680.2 | Symbols:  | endonuclease, putative |
           chr5:9311882-9315458 REVERSE
          Length = 383

 Score =  308 bits (790), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 145/166 (87%), Positives = 154/166 (92%)

Query: 25  YSRRADATEDLAQALETGIKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAE 84
           YS+RADAT DL  A+E G KEDIEKYSKRTVKVTKQHN+DCKRLLRLMGVPV+EA SEAE
Sbjct: 102 YSKRADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAE 161

Query: 85  AQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNLNM 144
           AQCAALCKSGKVY VASEDMDSLTFGAP+FLRHLMDPSSRKIPVMEFE+ KILEEL L M
Sbjct: 162 AQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTM 221

Query: 145 DQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETILENINRD 190
           DQFIDLCILSGCDYCDSIRGIGG TALKLIRQHG IETILEN+N++
Sbjct: 222 DQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKE 267


>AT5G26680.1 | Symbols:  | endonuclease, putative |
           chr5:9311882-9315458 REVERSE
          Length = 453

 Score =  307 bits (786), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 145/166 (87%), Positives = 154/166 (92%)

Query: 25  YSRRADATEDLAQALETGIKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAE 84
           YS+RADAT DL  A+E G KEDIEKYSKRTVKVTKQHN+DCKRLLRLMGVPV+EA SEAE
Sbjct: 102 YSKRADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAE 161

Query: 85  AQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNLNM 144
           AQCAALCKSGKVY VASEDMDSLTFGAP+FLRHLMDPSSRKIPVMEFE+ KILEEL L M
Sbjct: 162 AQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTM 221

Query: 145 DQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETILENINRD 190
           DQFIDLCILSGCDYCDSIRGIGG TALKLIRQHG IETILEN+N++
Sbjct: 222 DQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKE 267


>AT3G28030.1 | Symbols: UVH3, UVR1 | UVH3 (ULTRAVIOLET HYPERSENSITIVE
            3); DNA binding / catalytic/ endonuclease/ nuclease/
            single-stranded DNA binding | chr3:10424321-10431178
            FORWARD
          Length = 1479

 Score = 77.8 bits (190), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 75/130 (57%), Gaps = 3/130 (2%)

Query: 45   EDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDM 104
            ++  K  +    V+ +   +C+ LL++ G+P I AP EAEAQCA + +S  V  + ++D 
Sbjct: 909  DEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDS 968

Query: 105  DSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNLNMDQFIDLCILSGCDYCDSIRG 164
            D   FGA    +++ D   RK  V  + +K I +EL L+ D+ I + +L G DY + I G
Sbjct: 969  DVFLFGARSVYKNIFD--DRKY-VETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISG 1025

Query: 165  IGGLTALKLI 174
            IG + A++++
Sbjct: 1026 IGIVNAIEVV 1035


>AT1G01880.1 | Symbols:  | DNA repair protein, putative |
           chr1:306558-308991 REVERSE
          Length = 570

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 56  KVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFL 115
           K+  +   +C  LL L+G+PV++A  EAEA CA L   G V A  + D D+  FGA   +
Sbjct: 114 KLFSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVI 173

Query: 116 RHLMDPSSRKIPVMEFEIKKILEELNLNMDQFIDLCILSGCDY-CDSIRGIGGLTALKLI 174
           + +  P+SR+ P   + +  I   L L     I + +L G DY    + GIG   AL+++
Sbjct: 174 KDI-KPNSRE-PFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIV 231

Query: 175 RQ 176
           R+
Sbjct: 232 RE 233


>AT1G29630.2 | Symbols:  | DNA binding / catalytic/ nuclease |
           chr1:10349587-10353538 FORWARD
          Length = 735

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 14/172 (8%)

Query: 33  EDLAQALETGIKED----IEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCA 88
           E+LA+ALE     +     E YSK  V ++     +  ++LR   V  + AP EA+AQ A
Sbjct: 98  ENLARALEHEANGNSSAAYECYSK-AVDISPSIAHELIQVLRQENVDYVVAPYEADAQMA 156

Query: 89  ALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNLNMDQF- 147
            L  + +V A+ +ED D + FG  R +   MD     +   EF+  K+ +  +L++  F 
Sbjct: 157 FLAITKQVDAIITEDSDLIPFGCLRII-FKMDKFGHGV---EFQASKLPKNKDLSLSGFS 212

Query: 148 ----IDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETILENINRDSLFVA 195
               +++CILSGCDY  S+ G+G   A  LI +    + +++++   ++ V 
Sbjct: 213 SQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVP 264


>AT1G18090.2 | Symbols:  | exonuclease, putative |
           chr1:6224539-6227715 FORWARD
          Length = 577

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 52  KRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAALC----KSGKVYAVASEDMDSL 107
           +R V VT        ++L+   V  I AP EA+AQ A L     + G + AV +ED D L
Sbjct: 123 QRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITEDSDLL 182

Query: 108 TFGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNL-NMDQ--FIDLCILSGCDYCDSIRG 164
            +G    +  +      +  V++   + + ++ +  N DQ  F  +C+L+GCD+  S+ G
Sbjct: 183 AYGCKAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFLPSVPG 242

Query: 165 IGGLTALKLIRQHGCIETIL 184
           +G   A   I ++  +E +L
Sbjct: 243 VGISRAHAFISKYQSVELVL 262


>AT1G18090.1 | Symbols:  | exonuclease, putative |
           chr1:6224539-6227715 FORWARD
          Length = 577

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 52  KRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAALC----KSGKVYAVASEDMDSL 107
           +R V VT        ++L+   V  I AP EA+AQ A L     + G + AV +ED D L
Sbjct: 123 QRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITEDSDLL 182

Query: 108 TFGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNL-NMDQ--FIDLCILSGCDYCDSIRG 164
            +G    +  +      +  V++   + + ++ +  N DQ  F  +C+L+GCD+  S+ G
Sbjct: 183 AYGCKAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCDFLPSVPG 242

Query: 165 IGGLTALKLIRQHGCIETIL 184
           +G   A   I ++  +E +L
Sbjct: 243 VGISRAHAFISKYQSVELVL 262