Jatropha Genome Database

JcCA0260771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0260771.10 + phase: 0 /partial
         (277 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55220.1 | Symbols:  | trigger factor type chaperone family p...   453   e-128

>AT5G55220.1 | Symbols:  | trigger factor type chaperone family
           protein | chr5:22397677-22400678 FORWARD
          Length = 547

 Score =  453 bits (1166), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 212/278 (76%), Positives = 259/278 (93%), Gaps = 1/278 (0%)

Query: 1   IGDVAVLDISATKVDEDNSSIN-IPDAESKGFHFDTEDGDKVLPGFLDSIIGMQRGETKS 59
           +GD+AV+DISAT +DED S+   IPDAESKGFHFDTE+G+++LPGFLD+IIG++ GE+KS
Sbjct: 270 VGDLAVVDISATTIDEDGSTGQAIPDAESKGFHFDTEEGNRLLPGFLDAIIGIRAGESKS 329

Query: 60  FPLVFPESWNQENLRGVQAQFTVECKELFYRDMPELDDSLADKLLPGCTTLQQVKESLLQ 119
           F LVFPESW QE+LRG +AQFTV+CKELFYRD+P LDDSLADKLLPGCTTL++V+E+L +
Sbjct: 330 FTLVFPESWKQESLRGQRAQFTVDCKELFYRDLPTLDDSLADKLLPGCTTLKEVEETLAK 389

Query: 120 KCQEVERTARDQATDNAILDQLHKMVEIDIPRSLFEEQGRQFYGAKLLEVQAKMKLNEEQ 179
           +CQE+E+ A++QATDNAIL+Q+ KMVE++IP+SLFEEQGRQFYGA+LLE+Q  MKLNE+Q
Sbjct: 390 RCQEMEQEAKEQATDNAILEQIRKMVEVEIPQSLFEEQGRQFYGARLLEIQGNMKLNEDQ 449

Query: 180 LASLSSPKAVNEYLENQKQNITKVIKQNLAVGDIFKRENLEFSTDDLVKEVENSISEFKR 239
           LASLSS KAVNE+LE Q+++IT +IKQN+AVGDIFKRENLEFSTD+LVKEVENSISEFK+
Sbjct: 450 LASLSSQKAVNEFLETQRESITNIIKQNIAVGDIFKRENLEFSTDELVKEVENSISEFKK 509

Query: 240 HKQEYDEERVRDQVQEILEGAKVLEWLKEHAEIQYITK 277
           HKQE+DEERV+DQVQEILEGAKVLEWLK+ AEIQYIT+
Sbjct: 510 HKQEFDEERVKDQVQEILEGAKVLEWLKDRAEIQYITR 547