Jatropha Genome Database
- JcCA0259681.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0259681.10 + phase: 0 /partial
(133 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA bin... 137 2e-33
AT3G48440.1 | Symbols: | zinc finger (CCCH-type) family protein... 53 5e-08
AT2G47850.2 | Symbols: | zinc finger (CCCH-type) family protein... 52 1e-07
AT2G47850.3 | Symbols: | zinc finger (CCCH-type) family protein... 52 2e-07
AT2G47850.1 | Symbols: | zinc finger (CCCH-type) family protein... 52 2e-07
AT3G06410.1 | Symbols: | nucleic acid binding / zinc ion bindin... 50 3e-07
AT5G18550.1 | Symbols: | nucleic acid binding / zinc ion bindin... 50 4e-07
AT5G63260.1 | Symbols: | zinc finger (CCCH-type) family protein... 50 5e-07
AT3G02830.1 | Symbols: ZFN1 | ZFN1 (ZINC FINGER PROTEIN 1); DNA ... 50 6e-07
AT1G04990.1 | Symbols: | zinc finger (CCCH-type) family protein... 49 1e-06
AT1G04990.2 | Symbols: | zinc finger (CCCH-type) family protein... 49 1e-06
AT5G16540.2 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA... 47 4e-06
AT5G16540.1 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA... 47 4e-06
AT5G16540.3 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA... 47 4e-06
AT2G32930.1 | Symbols: ZFN2 | ZFN2 (ZINC FINGER NUCLEASE 2); DNA... 47 5e-06
>AT3G12680.1 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA
binding | chr3:4025276-4028999 REVERSE
Length = 524
Score = 137 bits (345), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/76 (73%), Positives = 65/76 (85%)
Query: 1 MGAHNIIGQSEAWYSTSSLAKRYRFESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKF 60
+GAHN IGQ+EAWY+T KR + ES S+LPIYPQR GEKDC HYM TRTCKFG+SC+F
Sbjct: 138 LGAHNTIGQTEAWYTTDYFTKRPKLESTSHLPIYPQRAGEKDCTHYMQTRTCKFGESCRF 197
Query: 61 DHPVWVPEGGIPNWKE 76
DHP+WVPEGGIP+WKE
Sbjct: 198 DHPIWVPEGGIPDWKE 213
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YPQRPG+ +C +YM T CKFG+ CKF HP
Sbjct: 417 YPQRPGQSECDYYMKTGECKFGERCKFHHP 446
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+R G +C +YM T TCK+G +CKFDHP
Sbjct: 470 YPRREGALNCPYYMKTGTCKYGATCKFDHP 499
>AT3G48440.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr3:17941402-17943576 FORWARD
Length = 448
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 33 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
+YP RPG +DC+ YM T +CKFG SCKF+HP+
Sbjct: 106 VYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPL 137
>AT2G47850.2 | Symbols: | zinc finger (CCCH-type) family protein |
chr2:19595953-19598119 FORWARD
Length = 442
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 1 MGAHNIIGQSEAWYSTSSLAKRYRFESASNLPI-----YPQRPGEKDCAHYMLTRTCKFG 55
+GA ++ G ++ +T SL Y S+ I +P+RPGE +C +Y+ T CKFG
Sbjct: 222 VGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFG 281
Query: 56 DSCKFDHP 63
SCKF HP
Sbjct: 282 TSCKFHHP 289
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+RPG DCA+YM T C +G+ C+++HP
Sbjct: 42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHP 71
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+R GE C Y+ T TCKFG SCKF HP
Sbjct: 87 YPERFGEPPCQFYLKTGTCKFGASCKFHHP 116
>AT2G47850.3 | Symbols: | zinc finger (CCCH-type) family protein |
chr2:19595953-19598119 FORWARD
Length = 468
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 1 MGAHNIIGQSEAWYSTSSLAKRYRFESASNLPI-----YPQRPGEKDCAHYMLTRTCKFG 55
+GA ++ G ++ +T SL Y S+ I +P+RPGE +C +Y+ T CKFG
Sbjct: 248 VGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFG 307
Query: 56 DSCKFDHP 63
SCKF HP
Sbjct: 308 TSCKFHHP 315
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+RPG DCA+YM T C +G+ C+++HP
Sbjct: 42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHP 71
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+R GE C Y+ T TCKFG SCKF HP
Sbjct: 87 YPERFGEPPCQFYLKTGTCKFGASCKFHHP 116
>AT2G47850.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr2:19595953-19598119 FORWARD
Length = 468
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 1 MGAHNIIGQSEAWYSTSSLAKRYRFESASNLPI-----YPQRPGEKDCAHYMLTRTCKFG 55
+GA ++ G ++ +T SL Y S+ I +P+RPGE +C +Y+ T CKFG
Sbjct: 248 VGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFG 307
Query: 56 DSCKFDHP 63
SCKF HP
Sbjct: 308 TSCKFHHP 315
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+RPG DCA+YM T C +G+ C+++HP
Sbjct: 42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHP 71
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+R GE C Y+ T TCKFG SCKF HP
Sbjct: 87 YPERFGEPPCQFYLKTGTCKFGASCKFHHP 116
>AT3G06410.1 | Symbols: | nucleic acid binding / zinc ion binding |
chr3:1947471-1949528 REVERSE
Length = 462
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
YP RPGEK+C++Y+ T CKFG +C+F+HPV
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHPV 175
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 1 MGAHNIIGQSEAWYSTSSLAKRYRFESASNLPI--YPQRPGEKDCAHYMLTRTCKFGDSC 58
+G+ +I G + S ++ Y+ +SN +PQRP + +C ++M T CKFG SC
Sbjct: 269 IGSSSIYGLTPLSPSATAYTGTYQSVPSSNSTSKEFPQRPDQPECQYFMRTGDCKFGSSC 328
Query: 59 KFDHPV 64
++ HPV
Sbjct: 329 RYHHPV 334
>AT5G18550.1 | Symbols: | nucleic acid binding / zinc ion binding |
chr5:6160515-6162729 FORWARD
Length = 465
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
+P RPGEK+C+++M T CKFG +C++ HPV
Sbjct: 142 FPLRPGEKECSYFMRTGQCKFGSTCRYHHPV 172
Score = 46.2 bits (108), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
+PQRP + +C ++M T CKFG SC+F HP+
Sbjct: 297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPM 327
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
+P+R G+ C H+M T TCKFG SCK+ HP
Sbjct: 94 FPERMGQPVCQHFMRTGTCKFGASCKYHHP 123
>AT5G63260.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr5:25361900-25364453 FORWARD
Length = 435
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 33 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
+YP RP +DC+ YM T +CK+G SCKF+HPV
Sbjct: 97 VYPVRPDSEDCSFYMRTGSCKYGSSCKFNHPV 128
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 24/37 (64%)
Query: 35 PQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGI 71
P RPGEK+C YM +CKFG CKF+HP GG+
Sbjct: 192 PIRPGEKECPFYMRNGSCKFGSDCKFNHPDPTAIGGV 228
>AT3G02830.1 | Symbols: ZFN1 | ZFN1 (ZINC FINGER PROTEIN 1); DNA
binding / nuclease/ nucleic acid binding |
chr3:614075-615916 FORWARD
Length = 397
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 25/30 (83%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+RPGE DC++Y+ T C+FG +C+F+HP
Sbjct: 37 YPERPGEPDCSYYIRTGLCRFGSTCRFNHP 66
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 33 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
++P+RPG+ +C YM T CKFG CKF HP
Sbjct: 270 VFPERPGQPECQFYMKTGDCKFGTVCKFHHP 300
>AT1G04990.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:1419368-1421454 REVERSE
Length = 404
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPE 68
YP RPGE+DC Y+ T C +G SC+++HP +P+
Sbjct: 44 YPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQ 78
>AT1G04990.2 | Symbols: | zinc finger (CCCH-type) family protein
| chr1:1419368-1421454 REVERSE
Length = 404
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPE 68
YP RPGE+DC Y+ T C +G SC+++HP +P+
Sbjct: 44 YPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQ 78
>AT5G16540.2 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding |
chr5:5403437-5405034 FORWARD
Length = 368
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+R GE DCA+Y+ T C+FG +C+F+HP
Sbjct: 39 YPERHGEPDCAYYIRTGLCRFGSTCRFNHP 68
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 33 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
++P+RPG+ +C YM T CKFG CKF HP
Sbjct: 239 VFPERPGQPECQFYMKTGDCKFGTVCKFHHP 269
>AT5G16540.1 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding |
chr5:5403437-5405034 FORWARD
Length = 375
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+R GE DCA+Y+ T C+FG +C+F+HP
Sbjct: 39 YPERHGEPDCAYYIRTGLCRFGSTCRFNHP 68
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 33 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
++P+RPG+ +C YM T CKFG CKF HP
Sbjct: 239 VFPERPGQPECQFYMKTGDCKFGTVCKFHHP 269
>AT5G16540.3 | Symbols: ZFN3 | ZFN3 (ZINC FINGER NUCLEASE 3); DNA
binding / nuclease/ nucleic acid binding |
chr5:5403598-5405034 FORWARD
Length = 354
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+R GE DCA+Y+ T C+FG +C+F+HP
Sbjct: 18 YPERHGEPDCAYYIRTGLCRFGSTCRFNHP 47
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 33 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
++P+RPG+ +C YM T CKFG CKF HP
Sbjct: 218 VFPERPGQPECQFYMKTGDCKFGTVCKFHHP 248
>AT2G32930.1 | Symbols: ZFN2 | ZFN2 (ZINC FINGER NUCLEASE 2); DNA
binding / nuclease/ nucleic acid binding |
chr2:13965990-13968419 REVERSE
Length = 453
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVW-VPEGGI 71
YP RPGE+DC ++ T C +G+SC+++HP+ +P+G I
Sbjct: 41 YPDRPGERDCQFFLRTGQCGYGNSCRYNHPLTNLPQGII 79