Jatropha Genome Database

JcCA0259651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0259651.10 + phase: 2 /pseudo/partial
         (377 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11560.1 | Symbols:  | catalytic | chr5:3709734-3713994 REVERSE    269   2e-72

>AT5G11560.1 | Symbols:  | catalytic | chr5:3709734-3713994 REVERSE
          Length = 982

 Score =  269 bits (687), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 137/245 (55%), Positives = 177/245 (72%), Gaps = 1/245 (0%)

Query: 1   LNAKNGELLKHESAAFSGGFSGEXXXXXXXXXXXXXXXXXTLITVNFQNGDINFQKTYIS 60
           +++K+GE++  +S  F GGFSGE                  L+T+ F +GDI+FQKT IS
Sbjct: 206 IDSKSGEVVAQKSTVFPGGFSGEISSVSSDKVVVLDSTRSILVTIGFIDGDISFQKTPIS 265

Query: 61  DLIEDPLGTVKILPSKLTGMFTLTINSFTIFIRVISEGKLEVVDKINHVTAVSDALSFSE 120
           DL+ED  GT +IL   L+ M  + +N  TIF+ V  +GKLEVVD ++  TA+SD+L  ++
Sbjct: 266 DLVEDS-GTAEILSPLLSNMLAVKVNKRTIFVNVGDKGKLEVVDSLSDETAMSDSLPVAD 324

Query: 121 GQQAFALIEHQDNDIYLIVKLGHDWNNDLLKERIKIDHQRGLVHKVFINNYIRTDRSHGF 180
            Q+AFA + H+ + I+L+VKL +D NN LL+E I++D  RG VHKVF+NNYIRTDRS+GF
Sbjct: 325 DQEAFASVHHEGSRIHLMVKLVNDLNNVLLRETIQMDQNRGRVHKVFMNNYIRTDRSNGF 384

Query: 181 RALIVMEDHSLLLLQQGETVWSREDGLASIVDVTISELPVEKKGVSVAKVEQNLFEWLKG 240
           RALIVMEDHSLLLLQQG  VWSRE+GLAS+ DVT +ELP+EK GVSVAKVE  LFEWLKG
Sbjct: 385 RALIVMEDHSLLLLQQGAIVWSREEGLASVTDVTTAELPLEKDGVSVAKVEHTLFEWLKG 444

Query: 241 RNLVL 245
             L L
Sbjct: 445 HVLKL 449