Jatropha Genome Database

JcCA0257621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0257621.10 - phase: 0 
         (93 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) fam...    86   3e-18

>AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU)
          family protein | chr4:9805652-9814910 REVERSE
          Length = 1850

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 57/80 (71%)

Query: 12 IVSSLSSSFKQVPLPAIPPMLDCILASTGLSSASLFYSLLDSFPNLSKDFIKEDQKLDSG 71
          +++SLS SFKQVP  AIP  LDC+L+STG+S ++LF SL++ FP   +D +  D++ DS 
Sbjct: 5  VITSLSLSFKQVPPAAIPAFLDCVLSSTGVSPSTLFESLIEQFPFRLEDTVNGDKRFDSD 64

Query: 72 CCDFLMSIVGALCHLLKKLG 91
           C+ + S+V  LCHLLK  G
Sbjct: 65 DCNHIASLVAGLCHLLKNFG 84