Jatropha Genome Database

JcCA0257171.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0257171.30 + phase: 0 /TE
         (1274 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | unknown protein | chr1:7447690-7448403...   117   5e-26
AT5G48050.1 | Symbols:  | unknown protein | chr5:19472661-194737...    53   1e-06

>AT1G21280.1 | Symbols:  | unknown protein | chr1:7447690-7448403
           REVERSE
          Length = 237

 Score =  117 bits (293), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/204 (29%), Positives = 109/204 (53%), Gaps = 8/204 (3%)

Query: 27  HPG-LNLVSVPLNGNNYHSWSRSITIALRAKNKLDFINGRYEKPNSNSPVYEKWMRTDSM 85
           HP   ++  +  + +NY +W       LR   K  FI+G   KP+  SP+Y+ W + ++M
Sbjct: 26  HPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAM 85

Query: 86  VVSWLLNSISKDIAEAFLYSNSAKELWDELFQRYGDSNGPLLYQITREISSFSQGNYSIT 145
           V+ WL+NS++  + E+ +Y+ +A ++W++L + +       +YQ+ R +++  QG  S+ 
Sbjct: 86  VMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVE 145

Query: 146 VYFTKLKQKWDELASLKKFPVCSCGA-----AKFFMDFENDSRLMQFLMG--LNDSYDHV 198
            YF KL + W EL+     P C CG       K   +     +  +FLMG  LN  ++ V
Sbjct: 146 EYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLKLNQGFEAV 205

Query: 199 RNQILLMDPLPSINKAYSMVLRVE 222
             +I+   P PS+++A++MV   E
Sbjct: 206 TTKIMFQKPPPSLHEAFAMVKDAE 229


>AT5G48050.1 | Symbols:  | unknown protein | chr5:19472661-19473770
           REVERSE
          Length = 369

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 19/195 (9%)

Query: 32  LVSVPLNGNNYHSWSRSITIALRAKNKLDFINGRYEKPNSNSPVYEK-WMRTDSMVVSWL 90
            V++ LN  NY  W         +   L  I+G     ++ +P+ EK W   D +V  W+
Sbjct: 23  FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS----STPTPMTEKRWKERDGLVKMWI 78

Query: 91  LNSISKDIAEAFLYSN-SAKELWDELFQRYGDSNGPLLYQITREISSFSQGNYSITVYFT 149
             +I+  + +  +    +A++LW  L   + D+      Q   E+ + +  + S+  Y  
Sbjct: 79  YGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQ 138

Query: 150 KLKQKWDELASLKKFPVCSCGAAKFFMDFENDSRLMQFLMGLNDSYDHVRNQILLMDPLP 209
           KLK   D L ++   P+             +   +M  L GL + YD++ N I    P P
Sbjct: 139 KLKSLSDLLTNVDS-PIS------------DRVLVMHLLNGLTEKYDYILNVIKHKSPFP 185

Query: 210 SINKAYSMVLRVEKQ 224
           S  +A SM+L  E +
Sbjct: 186 SFTEARSMLLMEESR 200