Jatropha Genome Database

JcCA0257131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0257131.10 + phase: 2 /pseudo/partial
         (315 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18070.1 | Symbols: DRT101 | DRT101 (DNA-DAMAGE-REPAIR/TOLERA...   378   e-105

>AT5G18070.1 | Symbols: DRT101 | DRT101
           (DNA-DAMAGE-REPAIR/TOLERATION 101); intramolecular
           transferase, phosphotransferases / magnesium ion binding
           | chr5:5981117-5982787 FORWARD
          Length = 556

 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/301 (63%), Positives = 226/301 (75%), Gaps = 9/301 (2%)

Query: 11  FCSERKVLSTRIWSRRCWDKFFRCASLDGDADRLVYFSVPSSDSSTIDLVDGDKILSLFA 70
           F  + KVL      +   D   RCASLDGDADRLVYF +PS  S  ++L+DGDKILSLFA
Sbjct: 262 FVQKEKVLPVGFGFK---DVGMRCASLDGDADRLVYFYIPSDSSEKVELLDGDKILSLFA 318

Query: 71  VFIKEQLAVLNTEGEEKISDDYQARVGVIQTAYANGASTYYLKQLGLEVVFTPTGVKYLH 130
           +FIKEQL  L  + E K     Q+R+GV+QTAYANGAST YLK LGL+VVF  TGVK+LH
Sbjct: 319 LFIKEQLNALEDDEERK-----QSRLGVVQTAYANGASTDYLKHLGLDVVFAKTGVKHLH 373

Query: 131 EKAAQYDIGIYFEANGHGTILFSESFLSWLEERCNELSSKNK-DSEQHKAALRLLAVSRL 189
           EKAA++DIGIYFEANGHGTILFSESFLSWL  +  +L++K +  SE+HKA  RL+AVS L
Sbjct: 374 EKAAEFDIGIYFEANGHGTILFSESFLSWLVSKQKDLTAKGQGGSEEHKAVSRLMAVSNL 433

Query: 190 INQAVGDALSGLLLVEAILRHMGWSIHKWAELYQDLPSRQIKXXXXXXXXXXXXXXXXXX 249
           INQAVGDALSG+LLVE IL+H+GWSI KW ELY+DLPSRQIK                  
Sbjct: 434 INQAVGDALSGVLLVEVILQHLGWSIEKWNELYKDLPSRQIKVEVPDRTAVVTTSEETEA 493

Query: 250 XKPLGIQDAINAQVAKYSHGRCFIRPSGTEDFIRVYAEASTQEEADSLAGSVTKLVDQYL 309
            +P+GIQDAIN+++ KYS GR FIRPSGTED +RVYAEASTQE+ADSLA SV +LV  +L
Sbjct: 494 LRPMGIQDAINSEIKKYSRGRAFIRPSGTEDVVRVYAEASTQEDADSLANSVAQLVKSFL 553

Query: 310 G 310
           G
Sbjct: 554 G 554