Jatropha Genome Database

JcCA0255951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0255951.10 - phase: 0 /pseudo
         (162 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23490.1 | Symbols: CYN | CYN (CYANASE); DNA binding / cyanat...   183   3e-47

>AT3G23490.1 | Symbols: CYN | CYN (CYANASE); DNA binding / cyanate
           hydratase/ hydro-lyase | chr3:8423238-8424415 REVERSE
          Length = 168

 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 97/110 (88%)

Query: 5   KATMANHLLAVKRNSGKNYSQIAEETGLTNVYVAQLLKRQAQLKPETAPKLRAALPELSD 64
           K ++ N LLAVK  SGK +SQ+A ETGLTNVYVAQLL+RQAQLKP+T PKL+ ALP L+D
Sbjct: 6   KQSVTNQLLAVKSASGKTFSQLAAETGLTNVYVAQLLRRQAQLKPDTVPKLKEALPALTD 65

Query: 65  EMLQEMMRPPMRSYDPNLIQEPTVYRLNEAVMHFGESIKEIINEEFGDGI 114
           E++ +MM PP RSYDPNLIQEPT+YRLNEAVMHFGESIKEIINE+FGDGI
Sbjct: 66  ELIGDMMSPPWRSYDPNLIQEPTIYRLNEAVMHFGESIKEIINEDFGDGI 115