Jatropha Genome Database

JcCA0255541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0255541.10 + phase: 0 
         (90 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80120.1 | Symbols:  | unknown protein | chr1:30139198-301399...   115   4e-27
AT3G15810.1 | Symbols:  | unknown protein | chr3:5348054-5349178...   107   2e-24
AT2G38640.1 | Symbols:  | unknown protein | chr2:16157725-161584...    63   4e-11
AT1G63410.1 | Symbols:  | unknown protein | chr1:23510075-235119...    55   7e-09
AT1G53900.1 | Symbols:  | GTP binding / translation initiation f...    55   8e-09
AT1G53880.1 | Symbols:  | GTP binding / translation initiation f...    55   8e-09
AT3G14260.1 | Symbols:  | unknown protein | chr3:4747986-4748779...    52   7e-08
AT1G53890.2 | Symbols:  | unknown protein | chr1:20124860-201256...    51   1e-07
AT1G53870.2 | Symbols:  | unknown protein | chr1:20112295-201130...    51   1e-07
AT1G53870.1 | Symbols:  | unknown protein | chr1:20112295-201130...    51   2e-07
AT1G53890.1 | Symbols:  | unknown protein | chr1:20124860-201256...    51   2e-07
AT5G41590.1 | Symbols:  | unknown protein | chr5:16632221-166338...    45   7e-06

>AT1G80120.1 | Symbols:  | unknown protein |
          chr1:30139198-30139986 FORWARD
          Length = 210

 Score =  115 bits (289), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 64/73 (87%), Gaps = 1/73 (1%)

Query: 1  MKGGLVVDSGFIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSY-GPDTRDTGEV 59
          MKGGL+VD  FI+ +E+ LTV KTSLFFA DGFTVYDCKG LVFRVDSY GP+TRDT EV
Sbjct: 1  MKGGLLVDDEFIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEV 60

Query: 60 VLMDAHGRCLLTV 72
          VLMDAHGRCLLT+
Sbjct: 61 VLMDAHGRCLLTL 73


>AT3G15810.1 | Symbols:  | unknown protein | chr3:5348054-5349178
          REVERSE
          Length = 220

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 60/71 (84%)

Query: 5  LVVDSGFIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDA 64
          +VVD  ++YQ++K LTV KTSLF+  DGF  YDC+G+++FRVDSYGPDTRD  E+VLMDA
Sbjct: 19 IVVDKAYLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDA 78

Query: 65 HGRCLLTVRKK 75
           G+CLLTV++K
Sbjct: 79 TGKCLLTVKRK 89


>AT2G38640.1 | Symbols:  | unknown protein |
          chr2:16157725-16158474 REVERSE
          Length = 196

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 2/58 (3%)

Query: 18 LLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLLTVRKK 75
          +LTV K SL F  DGFTVY+  GELVFRVD+Y    RD   +VLMDA G  LL++R+K
Sbjct: 24 VLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPRDN--IVLMDASGFPLLSIRRK 79


>AT1G63410.1 | Symbols:  | unknown protein |
          chr1:23510075-23511997 REVERSE
          Length = 208

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 6  VVDSGFIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAH 65
           + S ++  + +  TV   SL +  +G TVY+  GE+ +RV++Y    + + EV +MD H
Sbjct: 9  AISSPYMSTERETFTVWMKSLVYQTNGLTVYNSNGEITYRVENYD---KCSNEVHIMDLH 65

Query: 66 GRCLLTVRKKVIYI 79
          G  L T+RKK +++
Sbjct: 66 GNILFTIRKKKLWL 79


>AT1G53900.1 | Symbols:  | GTP binding / translation initiation
          factor | chr1:20127634-20130834 FORWARD
          Length = 580

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 9  SGFIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRC 68
          S ++  +++  T+   SL F + G TV+D KG L++RVD+Y  +++   EV LMD +G+ 
Sbjct: 22 SPYLTTEKESFTIWMRSLVFHSKGCTVFDSKGNLIYRVDNY--NSKSCSEVYLMDLYGKI 79

Query: 69 LLTVRKK 75
          L T+R+K
Sbjct: 80 LFTLRQK 86


>AT1G53880.1 | Symbols:  | GTP binding / translation initiation
          factor | chr1:20115069-20118269 FORWARD
          Length = 580

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 9  SGFIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRC 68
          S ++  +++  T+   SL F + G TV+D KG L++RVD+Y  +++   EV LMD +G+ 
Sbjct: 22 SPYLTTEKESFTIWMRSLVFHSKGCTVFDSKGNLIYRVDNY--NSKSCSEVYLMDLYGKI 79

Query: 69 LLTVRKK 75
          L T+R+K
Sbjct: 80 LFTLRQK 86


>AT3G14260.1 | Symbols:  | unknown protein | chr3:4747986-4748779
           REVERSE
          Length = 230

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 3   GGLVVDSGFIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLM 62
            G    S ++  +++  T+   SL F  +G TV+D KG +++RVD+Y  +++   EV LM
Sbjct: 35  AGEETSSPYLTTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNY--NSKSCREVYLM 92

Query: 63  DAHGRCLLTVRKK 75
           D  G  L T+R++
Sbjct: 93  DLSGHVLFTLRRQ 105


>AT1G53890.2 | Symbols:  | unknown protein |
          chr1:20124860-20125659 FORWARD
          Length = 202

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 11 FIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLL 70
          ++  +++  T+   SL F + G TV+D KG L++RVD+Y   +  + EV  MD +G+ L 
Sbjct: 36 YLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSW-SNEVYFMDLNGKILF 94

Query: 71 TVRKK 75
          T+R+K
Sbjct: 95 TLRQK 99


>AT1G53870.2 | Symbols:  | unknown protein |
          chr1:20112295-20113094 FORWARD
          Length = 202

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 11 FIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLL 70
          ++  +++  T+   SL F + G TV+D KG L++RVD+Y   +  + EV  MD +G+ L 
Sbjct: 36 YLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSW-SNEVYFMDLNGKILF 94

Query: 71 TVRKK 75
          T+R+K
Sbjct: 95 TLRQK 99


>AT1G53870.1 | Symbols:  | unknown protein |
          chr1:20112295-20113057 FORWARD
          Length = 217

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 11 FIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLL 70
          ++  +++  T+   SL F + G TV+D KG L++RVD+Y   +  + EV  MD +G+ L 
Sbjct: 36 YLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSW-SNEVYFMDLNGKILF 94

Query: 71 TVRKK 75
          T+R+K
Sbjct: 95 TLRQK 99


>AT1G53890.1 | Symbols:  | unknown protein |
          chr1:20124860-20125622 FORWARD
          Length = 217

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 11 FIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLL 70
          ++  +++  T+   SL F + G TV+D KG L++RVD+Y   +  + EV  MD +G+ L 
Sbjct: 36 YLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSW-SNEVYFMDLNGKILF 94

Query: 71 TVRKK 75
          T+R+K
Sbjct: 95 TLRQK 99


>AT5G41590.1 | Symbols:  | unknown protein |
          chr5:16632221-16633896 REVERSE
          Length = 221

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 19 LTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLLTVRK 74
          LTV + SL  + +GFTV D  G+L++RVD+Y   TR   E++LMD  G  LL + +
Sbjct: 39 LTVWRKSLLVSCEGFTVIDSNGDLIYRVDNYA-RTRPE-ELILMDKDGNSLLLMHR 92