Jatropha Genome Database

JcCA0254841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254841.10 - phase: 2 /partial/short
         (45 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09020.1 | Symbols: ATISA3, ISA3 | ISA3 (ISOAMYLASE 3); alpha...    59   5e-10

>AT4G09020.1 | Symbols: ATISA3, ISA3 | ISA3 (ISOAMYLASE 3);
           alpha-amylase/ isoamylase | chr4:5784099-5788839 FORWARD
          Length = 764

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 7   MADTNLKSPDDFVPEGVPGIGSVYNVAPYSSILLEAK 43
           +ADTNL+SPDDFV EGV G+   YNVAP+SSILL++K
Sbjct: 728 VADTNLESPDDFVREGVAGVADTYNVAPFSSILLQSK 764