Jatropha Genome Database

JcCA0254141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254141.20 + phase: 0 /partial
         (352 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04640.1 | Symbols: ATPC1 | ATPC1; enzyme regulator | chr4:23...   502   e-142
AT1G15700.1 | Symbols: ATPC2 | ATPC2; enzyme regulator | chr1:54...   411   e-115
AT2G33040.1 | Symbols:  | ATP synthase gamma chain, mitochondria...    64   2e-10

>AT4G04640.1 | Symbols: ATPC1 | ATPC1; enzyme regulator |
           chr4:2350761-2351882 REVERSE
          Length = 373

 Score =  502 bits (1293), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/354 (73%), Positives = 279/354 (78%), Gaps = 7/354 (1%)

Query: 1   MSCSNLT-MWVXXX-XXXXXXXXLAFRSSLNPFQLPXXXXXXXXXXXXXXXTQIHCGLRE 58
           M+CSNLT MWV            L+FRS L   + P               + +   LRE
Sbjct: 1   MACSNLTTMWVSSKPSLSADSSSLSFRSVL---KCPTNTSSPPSRASSV--SPLQASLRE 55

Query: 59  LRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDID 118
           LR RIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQT+D+D
Sbjct: 56  LRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTDDVD 115

Query: 119 APLTKVRPVKKVALVVCTGDRGLCGGFNNXXXXXXXXXXXXLKDLGLNYTVISVGKKGNS 178
            PLTKVRPVKKVALVV TGDRGLCGGFNN            LK LGL YTVISVGKKGNS
Sbjct: 116 VPLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNS 175

Query: 179 YFLRRPYIPVDRFLEGTSLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPV 238
           YFLRRPYIPVD++LE  +LPTAKEAQA+ADDVFSLF+SEEVDKVELLYTKFVSLVKS+PV
Sbjct: 176 YFLRRPYIPVDKYLEAGTLPTAKEAQAVADDVFSLFISEEVDKVELLYTKFVSLVKSEPV 235

Query: 239 IHTLLPLSPKGEICDINGNCVDAAEDEFFRLTTREGKLTVERDVVRTQTADFSPILQFEQ 298
           IHTLLPLSPKGEICDING CVDAAEDEFFRLTT+EGKLTVER+  RT TADFSPILQFEQ
Sbjct: 236 IHTLLPLSPKGEICDINGTCVDAAEDEFFRLTTKEGKLTVERETFRTPTADFSPILQFEQ 295

Query: 299 DPVQILDALLPLYLNSQIXXXXXXXXXXXXXXRMSAMSNATDNASELKKNLSRV 352
           DPVQILDALLPLYLNSQI              RMSAMS+A+DNAS+LKK+LS V
Sbjct: 296 DPVQILDALLPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSMV 349


>AT1G15700.1 | Symbols: ATPC2 | ATPC2; enzyme regulator |
           chr1:5402629-5403789 REVERSE
          Length = 386

 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/301 (67%), Positives = 235/301 (78%), Gaps = 1/301 (0%)

Query: 51  QIHCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINE 110
           QI  G+RELR RIDSVKNTQKITEAM+LVAAA+VRRAQ+AV+ GRPF+ETLVE+LY+IN+
Sbjct: 58  QIRAGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQ 117

Query: 111 QLQTEDIDAPLTKVRPVKKVALVVCTGDRGLCGGFNNXXXXXXXXXXXXLKDLGLNYTVI 170
             Q EDID PL+ VRPVK+VALVV TGD+GLCGGFNN            LK  G++  VI
Sbjct: 118 SAQLEDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVI 177

Query: 171 SVGKKGNSYFLRRPYIPVDRFLEGTSL-PTAKEAQAIADDVFSLFVSEEVDKVELLYTKF 229
           SVGKKGN+YF RR    VD+ +EG  + PT KEAQ IADDVFSLFVSEEVDKVEL+YTKF
Sbjct: 178 SVGKKGNAYFSRRDEFDVDKCIEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKF 237

Query: 230 VSLVKSDPVIHTLLPLSPKGEICDINGNCVDAAEDEFFRLTTREGKLTVERDVVRTQTAD 289
           VSLVKSDPVIHTLLPLS KGE CD+ G CVDA EDE FRLT+++GKL VER  +  +  +
Sbjct: 238 VSLVKSDPVIHTLLPLSMKGESCDVKGECVDAIEDEMFRLTSKDGKLAVERTKLEVEKPE 297

Query: 290 FSPILQFEQDPVQILDALLPLYLNSQIXXXXXXXXXXXXXXRMSAMSNATDNASELKKNL 349
            SP++QFEQDPVQILDA++PLYLNSQI              RM+AMSNATDNA ELKKNL
Sbjct: 298 ISPLMQFEQDPVQILDAMMPLYLNSQILRALQESLASELASRMNAMSNATDNAVELKKNL 357

Query: 350 S 350
           +
Sbjct: 358 T 358


>AT2G33040.1 | Symbols:  | ATP synthase gamma chain, mitochondrial
           (ATPC) | chr2:14018978-14021047 REVERSE
          Length = 325

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 23/189 (12%)

Query: 59  LRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDID 118
           +R R+ SVKN QKIT+AMK+VAA+K+R  Q    N R   +    +L +         ID
Sbjct: 48  VRNRMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQPFTALLGD------NPSID 101

Query: 119 APLTKVRPVKKVALVVCTGDRGLCGGFNNXXXXXXXXXXXXLKDLGLNYTVISVGKKGNS 178
                   VKK  +V  + D+GLCGG N+                      + VG+K  +
Sbjct: 102 --------VKKSVVVTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKA 153

Query: 179 YFLRRPYIPVDRFLEGTSLP----TAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVK 234
              R      D  L  T L        +   +ADD+     + E D + ++Y KF S+V 
Sbjct: 154 IMFRDS--KNDIVLSVTELNKNPLNYAQVSVLADDILK---NVEFDALRIVYNKFHSVVA 208

Query: 235 SDPVIHTLL 243
             P + T+L
Sbjct: 209 FLPTVSTVL 217