Jatropha Genome Database

JcCA0254131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254131.20 + phase: 0 /partial
         (424 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65070.1 | Symbols:  | DNA mismatch repair MutS family protei...   351   5e-97
AT5G54090.1 | Symbols:  | DNA mismatch repair MutS family protei...    61   1e-09

>AT1G65070.1 | Symbols:  | DNA mismatch repair MutS family protein |
           chr1:24173132-24176244 REVERSE
          Length = 857

 Score =  351 bits (901), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 190/386 (49%), Positives = 262/386 (67%), Gaps = 37/386 (9%)

Query: 42  SLQSETLKVLEWSSLCDRLSYFTSTSMGNSVARNASIPIGKSLQESRKLLDQTAAALA-- 99
           S++++TL+VLEW +LC++LS F ST+MG S  +NA IP+G S +ESR LL++T+AALA  
Sbjct: 45  SVENQTLEVLEWRALCNQLSPFASTTMGLSATKNAEIPVGNSPEESRNLLNETSAALAAM 104

Query: 100 -VMQSGPLDFSEIEDVTGIVDSAVSGNLLTIGEXXXXXXXXXXXXXXXXXXKDGGDCLER 158
            +M+S  L  SEI+D++ IV+ AVSG LLT+ E                  +       R
Sbjct: 105 EMMKSRGLGLSEIQDLSDIVERAVSGQLLTVRELCTVRSTLTAATSTFQKLRKAAISDNR 164

Query: 159 YGPLLEILQRCSFQIELEQKIGFCLDCNLSIILDRASEELEIIRSERKRNMENLDTLLKG 218
             PL++ILQ C F+  L+QKI FC+DCN+++ILDRASE+LEIIRSER+RNMENLD+LLK 
Sbjct: 165 VTPLVDILQGCDFKDTLQQKISFCIDCNMTMILDRASEDLEIIRSERRRNMENLDSLLKK 224

Query: 219 ISTRIFQAGGADRPLVTKRRSRLCVGVRATHRHLIRNGVILDVSGSGATYFMEPDDAVEL 278
           IST+IF AGG ++PL+T+RRSR+CV +RATH+ L+  GV+L VS S AT F+EP +AVEL
Sbjct: 225 ISTKIFLAGGINKPLITQRRSRMCVAIRATHKSLLPGGVVLSVSSSRATCFIEPKEAVEL 284

Query: 279 NNLEVMLSNSERAEEIVILSLLTSEIAQSEKEIKHLLDGILKVDLAFSRAAYAQQMNAIC 338
           NN+EV  +NSE+AEE+ ILS+LTSE+  +++EI HLLD IL++D+AF+RA++A  +N + 
Sbjct: 285 NNMEVRHANSEKAEEMAILSILTSEVVMAQREILHLLDRILELDIAFARASHANWINGVY 344

Query: 339 PILTSEGCEGELSGGAHYPLLIDIEGIRHPLLIGSSQRSLSDFLGSNSQNSTELNYGDGV 398
           P +TSE  +   + G    L +DI+  +HPLL+GS        LGS        N GD  
Sbjct: 345 PNVTSEHTK---TPG----LAVDIDSAQHPLLLGS-------VLGSP-------NGGDI- 382

Query: 399 MATERLSETVSEFPVPINIKVECGTK 424
                       FPVP++IKVE   K
Sbjct: 383 ------------FPVPVDIKVESSAK 396


>AT5G54090.1 | Symbols:  | DNA mismatch repair MutS family protein |
           chr5:21948283-21952550 REVERSE
          Length = 795

 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 129/292 (44%), Gaps = 40/292 (13%)

Query: 44  QSETLKVLEWSSLCDRLSYFTSTSMGNSVARNASIPIGKSLQESRKLLDQTAAALAVMQS 103
           Q+++L+VLEW  LCD ++ F  TS+G    +     + +S  ES KLLD+T AA+ +++ 
Sbjct: 48  QTDSLRVLEWDKLCDVVASFARTSLGREATKKKLWSLDQSFSESLKLLDETDAAIKMLEH 107

Query: 104 GP--LDFSEIEDVTGIVDSAV--SGNLLTIGEXXXXXXXX------XXXXXXXXXXKDGG 153
           G   LD S I     +V+S +  +   L++                          K  G
Sbjct: 108 GSFCLDLSSIH--ISLVESGIRHAKRRLSLRADQALEVASLLRFFENLQLDLKAAIKQDG 165

Query: 154 DCLERYGPLLEILQRCSFQIELEQKIGFCLDCNLSIILDRASEELEIIRSERKRNMENLD 213
           D  +R+ PL E++          + +   +D +   I D AS  L   R  R+R ++ L+
Sbjct: 166 DWYKRFMPLSELIVHPVINRSFVKLVEQVIDPD-GTIKDSASSAL---RQSRER-VQTLE 220

Query: 214 TLLKGISTRIFQAGGADRPLVTKRR------SRLCVGVRATHRHLIRNGVILD------- 260
             L+ +   I ++   D  ++ K +       R C+ + +     + NG++L        
Sbjct: 221 RKLQQLLDAIIRSQKDDESVMIKFQLAAEIDGRWCIQMSSNQLTSV-NGLLLSSVYFQVL 279

Query: 261 -------VSGSGATYFMEPDDAVELN-NLEVMLSNSERAEEIVILSLLTSEI 304
                   SGSG     EP  AV +N +L+   ++  +AE   ILS+LT +I
Sbjct: 280 SLEDNMCFSGSGGGTAAEPIAAVSMNDDLQSARASVAKAEA-EILSMLTEKI 330