Jatropha Genome Database

JcCA0253471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0253471.10 + phase: 2 /partial
         (329 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12560.2 | Symbols:  | F-box family protein | chr4:7441815-74...    88   1e-17
AT4G12560.1 | Symbols:  | F-box family protein | chr4:7441815-74...    88   1e-17
AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    75   6e-14
AT3G16210.1 | Symbols:  | F-box family protein | chr3:5494533-54...    64   2e-10
AT4G21240.1 | Symbols:  | F-box family protein | chr4:11322411-1...    62   3e-10
AT3G17570.1 | Symbols:  | F-box family protein | chr3:6009413-60...    57   1e-08
AT1G32600.1 | Symbols:  | F-box family protein-related | chr1:11...    56   3e-08
AT3G23880.1 | Symbols:  | F-box family protein | chr3:8622061-86...    49   3e-06

>AT4G12560.2 | Symbols:  | F-box family protein |
           chr4:7441815-7443157 FORWARD
          Length = 413

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 78/348 (22%)

Query: 2   DFIKSHFHR--SQGD-LSKFVCGS-NFY--DVNNSGEAVPVESPLEQQLPFLNGENCTIL 55
           DFI+SH HR    GD L   + G+   Y  D+++      VE P+++      G    + 
Sbjct: 39  DFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLDSVSDVEHPMKR------GGPTEVF 92

Query: 56  CSSDGLVLLRISIDKLNHRKTKAKVRADAYSLVLWNPSTRQREVLPNPKTFAPYNT---- 111
            SS+GL+ L  S                   L ++NPSTRQ   LP      P  +    
Sbjct: 93  GSSNGLIGLSNS----------------PTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRG 136

Query: 112 FISHGLGYDSATNCYKVVQ-------------CGY-YRILVFSLESYSWRKPKD------ 151
           ++ +GLGYDS ++ YKVV+             C + Y + VFSL+  SW++ +       
Sbjct: 137 YVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQ 196

Query: 152 ----FGFDITFSQA-GTLTHGAFHWVAELEN---SSKIVVAFNLSDEKIVQLQLPXXXXX 203
               F + + + +  G L   + HWV        +  ++V F+L+ E+   ++ P     
Sbjct: 197 LLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVAN 256

Query: 204 XXXXXXXXXELSVLQGNLCLLESIKNICNGGDSPGAYLNIWVMKEYGVTASWNKLITIAQ 263
                    ++ VL G LCL+      CN   S   Y+++W+MKEY V  SW K+ T+ +
Sbjct: 257 GNVDIQM--DIGVLDGCLCLM------CNYDQS---YVDVWMMKEYNVRDSWTKVFTVQK 305

Query: 264 ERVYSVSAHFCFKNDAVFIVNKS--LWDI--SALLRYDLKNKELKTLK 307
            +  SV + F +    V+  +K   L ++  + L+ +DL++K++ TL+
Sbjct: 306 PK--SVKS-FSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLR 350


>AT4G12560.1 | Symbols:  | F-box family protein |
           chr4:7441815-7443157 FORWARD
          Length = 413

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 78/348 (22%)

Query: 2   DFIKSHFHR--SQGD-LSKFVCGS-NFY--DVNNSGEAVPVESPLEQQLPFLNGENCTIL 55
           DFI+SH HR    GD L   + G+   Y  D+++      VE P+++      G    + 
Sbjct: 39  DFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLDSVSDVEHPMKR------GGPTEVF 92

Query: 56  CSSDGLVLLRISIDKLNHRKTKAKVRADAYSLVLWNPSTRQREVLPNPKTFAPYNT---- 111
            SS+GL+ L  S                   L ++NPSTRQ   LP      P  +    
Sbjct: 93  GSSNGLIGLSNS----------------PTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRG 136

Query: 112 FISHGLGYDSATNCYKVVQ-------------CGY-YRILVFSLESYSWRKPKD------ 151
           ++ +GLGYDS ++ YKVV+             C + Y + VFSL+  SW++ +       
Sbjct: 137 YVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQ 196

Query: 152 ----FGFDITFSQA-GTLTHGAFHWVAELEN---SSKIVVAFNLSDEKIVQLQLPXXXXX 203
               F + + + +  G L   + HWV        +  ++V F+L+ E+   ++ P     
Sbjct: 197 LLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVAN 256

Query: 204 XXXXXXXXXELSVLQGNLCLLESIKNICNGGDSPGAYLNIWVMKEYGVTASWNKLITIAQ 263
                    ++ VL G LCL+      CN   S   Y+++W+MKEY V  SW K+ T+ +
Sbjct: 257 GNVDIQM--DIGVLDGCLCLM------CNYDQS---YVDVWMMKEYNVRDSWTKVFTVQK 305

Query: 264 ERVYSVSAHFCFKNDAVFIVNKS--LWDI--SALLRYDLKNKELKTLK 307
            +  SV + F +    V+  +K   L ++  + L+ +DL++K++ TL+
Sbjct: 306 PK--SVKS-FSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLR 350


>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD
          Length = 427

 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 124/259 (47%), Gaps = 35/259 (13%)

Query: 86  SLVLWNPSTRQREVLP---NPKTFA-PYNTFISHGLGYDSATNCYKVVQ--CGYYRIL-- 137
           ++ L+NP+T   + LP    PK+     + F ++G G+D  T+ YK+V+       IL  
Sbjct: 181 AVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVATSEDILDA 240

Query: 138 -VFSLESYSWRKPKDFGF---DITFSQAGTLTHGAFHWV-AELENSSKIVVAFNLSDEKI 192
            V+SL++ SWR+  +  +   D +++ +G   +GA HWV  E  ++ ++VVAF++  E+ 
Sbjct: 241 SVYSLKADSWRRICNLNYEHNDGSYT-SGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEF 299

Query: 193 VQLQLPXXXXXXXXXXXXXXELSVLQGNLCLLESIKNICNGGDSPGAYLNIWVMKEYGVT 252
            ++ +P               +  L G LC++ S  ++ +         +IWVM EYG  
Sbjct: 300 REMPVPDEAEDCSHRFSNFV-VGSLNGRLCVVNSCYDVHD---------DIWVMSEYGEA 349

Query: 253 ASWNKLITIAQERVYSVSAHFC-FKNDAVFIVNKSLWDISALLRYDLKNKELKTLKTFEI 311
            SW++   I    +Y      C  KND   ++         L+ Y+ +      L    +
Sbjct: 350 KSWSR---IRINLLYRSMKPLCSTKNDEEVLLELD----GDLVLYNFETNASSNLGICGV 402

Query: 312 EVP---EMVSYVESLVSPN 327
           ++    E  +YVESL+SPN
Sbjct: 403 KLSDGFEANTYVESLISPN 421


>AT3G16210.1 | Symbols:  | F-box family protein |
           chr3:5494533-5495615 REVERSE
          Length = 360

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 125/298 (41%), Gaps = 65/298 (21%)

Query: 8   FHRSQGDLS--KFVC--GSNFYDVNNSGEAVPV-----ESPLEQQLPFLNGENCTILCSS 58
           F  +  D+S  KFV     NFY ++  G+  PV     + PL+Q +  ++   C + C  
Sbjct: 41  FTETYRDMSPAKFVSFYDKNFYMLDVEGKH-PVITNKLDFPLDQSM--IDESTCVLHCDG 97

Query: 59  DGLVLLRISIDKLNHRKTKAKVRADAYSLVLWNPSTRQREVLPNPKTFAPYNTFISHGLG 118
              V L+      NH            +L++WNP ++Q +++PNP  +   N     G G
Sbjct: 98  TLCVTLK------NH------------TLMVWNPFSKQFKIVPNPGIYQDSNIL---GFG 136

Query: 119 YDSATNCYKVV----QCGYYRILVFSLESYSWRKPKDFGF-DITF-SQAGTLTHGAFHWV 172
           YD   + YKVV    +       VF   + SW +     + D  +  + GT      +W+
Sbjct: 137 YDPVHDDYKVVTFIDRLDVSTAHVFEFRTGSWGESLRISYPDWHYRDRRGTFLDQYLYWI 196

Query: 173 AELENSSKIVVAFNLSDEKIVQLQLPXXXXXXXXXXXXXXELSVLQGNLCLLESIKNICN 232
           A   ++ + ++ FNLS  +  +L LP               L V    LC+ E    +C 
Sbjct: 197 AYRSSADRFILCFNLSTHEYRKLPLPVYNQGVTSSW-----LGVTSQKLCITEY--EMCK 249

Query: 233 GGDSPGAYLNIWVMKEYGVTASWNKLITIA-------QERVYSVSAHFC---FKNDAV 280
                   + I VM++   T SW+K+I+++       Q+R+Y     F     KND V
Sbjct: 250 KE------IRISVMEK---TGSWSKIISLSMSSFISVQDRIYDYQVEFVSFTRKNDLV 298


>AT4G21240.1 | Symbols:  | F-box family protein |
           chr4:11322411-11323664 FORWARD
          Length = 417

 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 17/134 (12%)

Query: 82  ADAYSLVLWNPSTRQREVLPNPKTFAPYNTFISHGLGYDSATNCYKVVQC-----GYYRI 136
            D Y++V+WNPS RQ   LP PK  +    FI   LGYD   + YKV+       G +  
Sbjct: 139 GDFYNIVVWNPSMRQHVTLPEPKPHSTVRYFIRSCLGYDPVEDKYKVLSISGYHNGNHDP 198

Query: 137 LVFSL-ESYSWR----KPKDFGFDITFSQAGTLTHGAFHWVAELE-------NSSKIVVA 184
           LVF+L    SWR     P D       S+ GT  +G  ++ A++        N   I+++
Sbjct: 199 LVFTLGPQESWRVIQNSPLDIPLPTGGSRVGTCINGHVYYEAQIRFKVDDIFNFENILMS 258

Query: 185 FNLSDEKIVQLQLP 198
           F++  EK   ++ P
Sbjct: 259 FDVRYEKFNTIKKP 272


>AT3G17570.1 | Symbols:  | F-box family protein |
           chr3:6009413-6010558 FORWARD
          Length = 381

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 10/125 (8%)

Query: 82  ADAYSLVLWNPSTRQREVLPNPKTFAPYNTFISHGLGYDSATNC---YKVVQCGY----- 133
            D   LV+WNP T +   +P  K+ +PY  +    LGYD+       YK+++C +     
Sbjct: 106 TDDSRLVVWNPYTGETRWIPY-KSNSPYEMYQKFVLGYDNTNKSRYSYKILRCYHGLIDF 164

Query: 134 -YRILVFSLESYSWRKPKDFGFDITFSQAGTLTHGAFHWVAELENSSKIVVAFNLSDEKI 192
            Y   ++   S+SWR+  D   + +F   G    G  +W A       I++ F+ + E+ 
Sbjct: 165 GYEFEIYEFNSHSWRRFYDNSPNCSFESKGVTLKGNTYWFASDTEGRHIILRFDFATERF 224

Query: 193 VQLQL 197
            +L L
Sbjct: 225 GRLSL 229


>AT1G32600.1 | Symbols:  | F-box family protein-related |
           chr1:11794802-11795683 FORWARD
          Length = 293

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 9/156 (5%)

Query: 71  LNHRKTKAKVRADAYSLVLWNPSTRQREVLPNPKTFAPYNTFISHGLGYDSATNCYKVVQ 130
           L+ R      R D   L +W P++ + + +P  K     N     G GYD   + YK+V 
Sbjct: 46  LSCRGVICLTRKDNNELAIWKPTSTKFKRVPMIKRGQTQNLL---GFGYDRVLDDYKIVT 102

Query: 131 CGYYRILVFSLESYSWRKPKDFGFDITF--SQAGTLTHGAFHWVAELENSSKIVVAFNLS 188
               +  +F+ +  SWR+ K       F   + GT+     +W+A   N  K ++ F+  
Sbjct: 103 IIDKKTYIFTFKESSWRESKLIPSSDCFFKERTGTVVDNCMYWIANRFNKEKFILCFDFV 162

Query: 189 DEKIVQLQLPXXXXXXXXXXXXXXELSVLQGNLCLL 224
           +E+  +L +P               L V +G LC++
Sbjct: 163 NEEYSKLNVPMMLSGLEFNSW----LDVSRGELCVI 194


>AT3G23880.1 | Symbols:  | F-box family protein |
           chr3:8622061-8623155 REVERSE
          Length = 364

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 23/186 (12%)

Query: 86  SLVLWNPSTR-QREVLPNPKTFAPYNTFISHGLGYDSATNCYKVVQCGYYR------ILV 138
           SL LWNP+ + Q+ +  +    +     +++G GYD + + YKVV     R        +
Sbjct: 129 SLYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKIETKI 188

Query: 139 FSLESYSWRKPKDFGFDITF---SQAGTLTHGAFHWVAELENSSKIVVAFNLSDEKIVQL 195
           +S     WR    F   +     S++G   +G  +W A   +SS  ++++++S ++  +L
Sbjct: 189 YSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSSWTIISYDMSRDEFKEL 248

Query: 196 QLPXXXXXXXXXXXXXXELSVLQGNLCLLESIKNICNGGDSPGAYLNIWVMKEYGVTASW 255
             P               L  L+G L ++   K         GA  ++WVMKE+G   SW
Sbjct: 249 PGPVCCGRGCFTMT----LGDLRGCLSMVCYCK---------GANADVWVMKEFGEVYSW 295

Query: 256 NKLITI 261
           +KL++I
Sbjct: 296 SKLLSI 301