Jatropha Genome Database
- JcCA0252741.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0252741.10 - phase: 0 /pseudo/partial
(314 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12560.2 | Symbols: | F-box family protein | chr4:7441815-74... 84 2e-16
AT4G12560.1 | Symbols: | F-box family protein | chr4:7441815-74... 84 2e-16
AT4G22390.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 71 8e-13
AT3G17490.1 | Symbols: | F-box family protein | chr3:5984827-59... 67 2e-11
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 62 4e-10
AT3G16210.1 | Symbols: | F-box family protein | chr3:5494533-54... 62 5e-10
AT4G04690.1 | Symbols: | F-box family protein (FBX15) | chr4:23... 57 2e-08
AT3G23880.1 | Symbols: | F-box family protein | chr3:8622061-86... 54 2e-07
AT3G20710.1 | Symbols: | F-box protein-related | chr3:7237911-7... 53 3e-07
AT3G47130.1 | Symbols: | F-box family protein-related | chr3:17... 52 6e-07
AT3G23260.1 | Symbols: | F-box family protein | chr3:8313334-83... 51 8e-07
AT3G20690.1 | Symbols: | F-box protein-related | chr3:7231570-7... 51 9e-07
AT3G17540.1 | Symbols: | F-box family protein | chr3:6002783-60... 51 1e-06
AT3G22650.1 | Symbols: ATSFL61, SFL61, CEG | CEG (CEGENDUO) | ch... 50 2e-06
AT3G21410.1 | Symbols: | F-box family protein (FBW1) | chr3:753... 49 5e-06
AT1G25055.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cyclin-lik... 48 7e-06
AT1G24881.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cyclin-lik... 48 7e-06
AT1G25211.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cyclin-lik... 48 7e-06
AT1G24800.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cyclin-lik... 48 7e-06
AT3G21120.1 | Symbols: | F-box family protein | chr3:7406326-74... 48 7e-06
>AT4G12560.2 | Symbols: | F-box family protein |
chr4:7441815-7443157 FORWARD
Length = 413
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 143/335 (42%), Gaps = 66/335 (19%)
Query: 1 AHLNRSIETNSHKKLVLDGHAPTFPQLYALDFDDGLKQPVELDDPLKH---------SHG 51
+HL+R ++T H ++L G +LY++D D L +++ P+K S+G
Sbjct: 43 SHLHRVLQTGDHLMILLRGAL----RLYSVDLD-SLDSVSDVEHPMKRGGPTEVFGSSNG 97
Query: 52 WFGYHIXXXXXXXXXXXXENTLKTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFG 111
G + L ++NP T++ L ++ + S+ R +G
Sbjct: 98 LIGL----------------SNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYG 141
Query: 112 LGYDDTSNDYRVVRILQ-----------EMQREVWIYSLRSNSWRKLDVWCE-------- 152
LGYD S+DY+VVR++Q EV ++SL+ NSW++++
Sbjct: 142 LGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYF 201
Query: 153 ----LSQGDMGVFVNGVLYFHGKN------LETIVAFDIATETFCTIPLPECYIPQGFRH 202
L + GV L++ IV FD+A E F + PE
Sbjct: 202 YYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDI 261
Query: 203 TRGLCVLEGKLC-CCXYGENGVDIYVGDQHEDGLTWSKLTMI----TYKYNFLVTPVFYS 257
+ VL+G LC C Y ++ VD+++ ++ +W+K+ + + K + P+ YS
Sbjct: 262 QMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYS 321
Query: 258 GEGDKILYIEENNEVVWYDFNRETHE--RFQTVPS 290
+ K+L N ++VW+D + R + PS
Sbjct: 322 KDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPS 356
>AT4G12560.1 | Symbols: | F-box family protein |
chr4:7441815-7443157 FORWARD
Length = 413
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 143/335 (42%), Gaps = 66/335 (19%)
Query: 1 AHLNRSIETNSHKKLVLDGHAPTFPQLYALDFDDGLKQPVELDDPLKH---------SHG 51
+HL+R ++T H ++L G +LY++D D L +++ P+K S+G
Sbjct: 43 SHLHRVLQTGDHLMILLRGAL----RLYSVDLD-SLDSVSDVEHPMKRGGPTEVFGSSNG 97
Query: 52 WFGYHIXXXXXXXXXXXXENTLKTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFG 111
G + L ++NP T++ L ++ + S+ R +G
Sbjct: 98 LIGL----------------SNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYG 141
Query: 112 LGYDDTSNDYRVVRILQ-----------EMQREVWIYSLRSNSWRKLDVWCE-------- 152
LGYD S+DY+VVR++Q EV ++SL+ NSW++++
Sbjct: 142 LGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYF 201
Query: 153 ----LSQGDMGVFVNGVLYFHGKN------LETIVAFDIATETFCTIPLPECYIPQGFRH 202
L + GV L++ IV FD+A E F + PE
Sbjct: 202 YYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDI 261
Query: 203 TRGLCVLEGKLC-CCXYGENGVDIYVGDQHEDGLTWSKLTMI----TYKYNFLVTPVFYS 257
+ VL+G LC C Y ++ VD+++ ++ +W+K+ + + K + P+ YS
Sbjct: 262 QMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYS 321
Query: 258 GEGDKILYIEENNEVVWYDFNRETHE--RFQTVPS 290
+ K+L N ++VW+D + R + PS
Sbjct: 322 KDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCPS 356
>AT4G22390.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s:
F-box associated type 1 (InterPro:IPR017451); BEST
Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT4G12560.2); Has 662 Blast hits to 662
proteins in 37 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 662; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr4:11813757-11815074 REVERSE
Length = 402
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 139/322 (43%), Gaps = 63/322 (19%)
Query: 1 AHLNRSIETNSHKKLVLDGHAPTFPQLYALDFDDGLKQPVELDDP-----LKHSHGWFGY 55
+HL R +ET H ++L G P+L + VELD P + H G+
Sbjct: 43 SHLRRRLETGEHLMILLRG-----PRLL---------RTVELDSPENVSDIPHPLQAGGF 88
Query: 56 HIXXXXXXXXXXXXENTLKTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYD 115
+ V L ++NP T++ L + R +GLGYD
Sbjct: 89 TEVFGSFNGVIGLCNSP---VDLAIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYD 145
Query: 116 DTSNDYRVVRILQEMQR----------EVWIYSLRSNSWRKLDVWCE------------L 153
+D++VVRI+Q + EV ++SL+ NSW+++ + E L
Sbjct: 146 SVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLL 205
Query: 154 SQGDMGVFVNGVLYFHGKNLETIVAF------DIATETFCTIPLP-ECYIPQGFRHTRGL 206
+ GV VN L++ + ++AF D+A++ + P E YI +
Sbjct: 206 PRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNM----DI 261
Query: 207 CVLEGKLCCCXYGE-NGVDIYVGDQHEDGLTWSKLTMITYKYNF----LVTPVFYSGEGD 261
VL+G +C Y E + VD++V ++ED +W+KL + + + P+ S +
Sbjct: 262 GVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRS 321
Query: 262 KILYIEENN--EVVWYDFNRET 281
KIL +E NN ++W+D ++
Sbjct: 322 KIL-LEINNAANLMWFDLESQS 342
>AT3G17490.1 | Symbols: | F-box family protein |
chr3:5984827-5985993 FORWARD
Length = 388
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 103/229 (44%), Gaps = 33/229 (14%)
Query: 71 NTLKTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTS----NDYRVVRI 126
+T + +L +WNP T + + I N R CD+F GYD++ N+Y+++R+
Sbjct: 114 STKRNTRLVVWNPCTGQTRW--------IKRRNRRMCDTFAFGYDNSKSSCLNNYKILRV 165
Query: 127 LQEM---QREVWIYSLRSNSWRKLDVWCELSQGDMGVFVNGVLYFHGKNLET---IVAFD 180
+++ Q E I+ SNSWR LDV V V G Y+ +T I FD
Sbjct: 166 CEKIKGQQFEYEIFEFSSNSWRVLDVNPNCIIEGRSVSVKGNSYWFATITKTHYFIRRFD 225
Query: 181 IATETFCTIPLP-------ECYIPQGFRHTRGLCVLEGKLCCCXYGENGVDIYVGDQHED 233
++ETF +PLP + FR + L VL + +DI+V ++ ++
Sbjct: 226 FSSETFQKLPLPFHIFDYNDSRALSAFREEQ-LSVLHQS-----FDTEKMDIWVTNKIDE 279
Query: 234 GLTWSKLTMITYKY-NFLVTPVFYSGEGDKILYIEENNEVVW-YDFNRE 280
WS T + N L P+ + +I+E ++ YD +RE
Sbjct: 280 TTDWSWSKFFTVRLINRLDYPISMMMKSPLSFFIDEKKNIILCYDKHRE 328
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD
Length = 427
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 143/320 (44%), Gaps = 74/320 (23%)
Query: 12 HKKLVLDGHAPTFPQLYALDFD---DGLKQ--PVELDDPLKHSHGWF--------GYHIX 58
H+KL++ H LY+LDF+ DG++ VE + PLK F G H+
Sbjct: 90 HRKLIVSSH-----NLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLY 144
Query: 59 XXXXXXXXXXXE-------------NTLKTVKLG-----LWNPFTKRYKILTDPAVSIIW 100
+ N L + G L+NP T K L P
Sbjct: 145 DDRRVMLKLNAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRL--PENFRPK 202
Query: 101 SSNYRRCD--SFGLGYDDTSNDYRVVRILQEMQR--EVWIYSLRSNSWRKLDVWCELS-Q 155
S Y R + ++G G+D ++DY++V+++ + + +YSL+++SWR++ C L+ +
Sbjct: 203 SVEYERDNFQTYGFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRI---CNLNYE 259
Query: 156 GDMGVFVNGVLYFHGK----------NLETIVAFDIATETFCTIPLPECYIPQGFRHTRG 205
+ G + +GV +F+G N +VAFDI TE F +P+P+ R +
Sbjct: 260 HNDGSYTSGV-HFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNF 318
Query: 206 LC-VLEGKLCCCXYGENGV-----DIYVGDQHEDGLTWSKLTMITYKYNFLVTPV--FYS 257
+ L G+LC N DI+V ++ + +WS++ + N L + S
Sbjct: 319 VVGSLNGRLCVV----NSCYDVHDDIWVMSEYGEAKSWSRI-----RINLLYRSMKPLCS 369
Query: 258 GEGDKILYIEENNEVVWYDF 277
+ D+ + +E + ++V Y+F
Sbjct: 370 TKNDEEVLLELDGDLVLYNF 389
>AT3G16210.1 | Symbols: | F-box family protein |
chr3:5494533-5495615 REVERSE
Length = 360
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 29/228 (12%)
Query: 72 TLKTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVRILQEMQ 131
TLK L +WNPF+K++KI+ +P + Y+ + G GYD +DY+VV + +
Sbjct: 102 TLKNHTLMVWNPFSKQFKIVPNPGI-------YQDSNILGFGYDPVHDDYKVVTFIDRLD 154
Query: 132 -REVWIYSLRSNSWRKLDVWCELSQGD------MGVFVNGVLY---FHGKNLETIVAFDI 181
++ R+ SW + +S D G F++ LY + I+ F++
Sbjct: 155 VSTAHVFEFRTGSWGES---LRISYPDWHYRDRRGTFLDQYLYWIAYRSSADRFILCFNL 211
Query: 182 ATETFCTIPLPECYIPQGFRHTRGLCVLEGKLCCCXYGENGVDIYVGDQHEDGLTWSKLT 241
+T + +PLP QG + L V KLC Y +I + + G +WSK+
Sbjct: 212 STHEYRKLPLP--VYNQGVTSS-WLGVTSQKLCITEYEMCKKEIRISVMEKTG-SWSKII 267
Query: 242 MITYKYNFLVTPVFYSGEGDKILYIEENNEVVWYD-----FNRETHER 284
++ V Y + + + + +N+ VV + F E ER
Sbjct: 268 SLSMSSFISVQDRIYDYQVEFVSFTRKNDLVVTFTGYNDHFEMEPEER 315
>AT4G04690.1 | Symbols: | F-box family protein (FBX15) |
chr4:2373999-2375135 REVERSE
Length = 378
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 64/131 (48%), Gaps = 18/131 (13%)
Query: 74 KTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDT-SNDYRVVRILQEMQ- 131
+ L +WNP TK+ K + +P S Y D FG+GYD+T +Y++VR M
Sbjct: 116 REANLAVWNPVTKKIKWI-EPLDS------YYETDYFGIGYDNTCRENYKIVRFSGPMSF 168
Query: 132 --REVWIYSLRSNSWRKLDV--WCELSQGDMGVFVNGVLYFHGKNLET-IVAFDIATETF 186
E IY +S+SWR LD W +Q GV V G +Y+ E I+ FD + ETF
Sbjct: 169 DDTECEIYEFKSDSWRTLDTKYWDVYTQC-RGVSVKGNMYWIADTKEKFILRFDFSMETF 227
Query: 187 ---CTIPLPEC 194
C P C
Sbjct: 228 KNVCVCPPIGC 238
>AT3G23880.1 | Symbols: | F-box family protein |
chr3:8622061-8623155 REVERSE
Length = 364
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 15/190 (7%)
Query: 78 LGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVRILQEMQR---EV 134
L LWNP K + L+ S + +S+ ++G GYD++ +DY+VV +LQ+ + E
Sbjct: 130 LYLWNPTIKLQQRLSS---SDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKIET 186
Query: 135 WIYSLRSNSWRKLDVW----CELSQGDMGVFVNGVL---YFHGKNLETIVAFDIATETFC 187
IYS R WR + + G+++NG L + TI+++D++ + F
Sbjct: 187 KIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSSWTIISYDMSRDEFK 246
Query: 188 TIPLPECYIPQGFRHTRGLCVLEGKLCCCXYGENGVDIYVGDQHEDGLTWSKLTMITYKY 247
+P P C F T G + C G N D++V + + +WSKL I
Sbjct: 247 ELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANA-DVWVMKEFGEVYSWSKLLSIPGLT 305
Query: 248 NFLVTPVFYS 257
+F V P++ S
Sbjct: 306 DF-VRPLWIS 314
>AT3G20710.1 | Symbols: | F-box protein-related |
chr3:7237911-7238999 REVERSE
Length = 362
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 108 DSFGLGYDDTSNDYRVVRILQEMQREVWIYSLRSNSWRKLDVWCELSQGDM--GVFVNGV 165
D + LGYD +S ++++R+ Q + IY L S+SW D E M GV +NG
Sbjct: 144 DRYALGYDKSSGSHKILRLFGVNQNNLNIYDLSSSSWMIPDGTLERDMEYMKQGVSLNGD 203
Query: 166 LYFHGKNLETI----VAFDIATETFCTIPLPECYIPQGFRHTRGLCVL----EGKLCCCX 217
Y++ K+ E+I + FD E F T PLP + +G+ +G L E KL
Sbjct: 204 TYWYAKDKESIDWYLLCFDFTRERFGT-PLPLPFSNEGYTLHKGYKSLSALKEEKLAVLL 262
Query: 218 YGENGVDIYVGDQHE-DGLTWS 238
+ + + I+V ++ E D ++WS
Sbjct: 263 W--DTMVIWVTNKIEPDAVSWS 282
>AT3G47130.1 | Symbols: | F-box family protein-related |
chr3:17353714-17354851 FORWARD
Length = 360
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 15/142 (10%)
Query: 73 LKTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVRILQ---E 129
+ + +G+ NP T++ + P + C ++ +GYD + Y+V+ I +
Sbjct: 132 ISRLSMGICNPSTRQLQFF--PQLKYKEDPKLFTCPNYFVGYDSIEDQYKVLAIDRFHLR 189
Query: 130 MQREVWIYSLRSNSWRKLD-VWCELSQGDMGVFVNGVLYFHGK--------NLETIVAFD 180
M+ ++ + R +WR+ V C G+++NG LY+ N IV+FD
Sbjct: 190 MEHKILLLG-REEAWREAPCVACPHVSHTSGLYMNGTLYYGASRTDIDPWNNNSVIVSFD 248
Query: 181 IATETFCTIPLPECYIPQGFRH 202
+ ETF I +P +P G+ +
Sbjct: 249 VRLETFKIINVPSKVLPMGYEN 270
>AT3G23260.1 | Symbols: | F-box family protein |
chr3:8313334-8314422 FORWARD
Length = 362
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 27/190 (14%)
Query: 72 TLKTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSN--DYRVVRILQE 129
++K L +WNP + K++ S Y+ D + LGYD+ S+ Y+V+R++ +
Sbjct: 109 SIKENTLEVWNPCSGEAKLIKPR------HSYYKESDFYALGYDNKSSCKKYKVLRVISQ 162
Query: 130 M------QREVWIYSLRSNSWRKLDVWCELS-QGDMGVFVNGVLYFHGKN----LETIVA 178
+ + E IY ++SWR ELS + V V G Y+ +N + ++
Sbjct: 163 VHVQGDFKIEYEIYDFTNDSWRVHGATTELSIRQKHPVSVKGSTYWVVRNRYFPYKYFLS 222
Query: 179 FDIATETFCTIPLPECYIPQGFRHTRGLCVLEGKLCCCXY-----GENGVDIYVGDQHED 233
FD +TE F ++ LP+ P + T V E +LC Y ++++V
Sbjct: 223 FDFSTERFQSLSLPQ---PFPYLVTDLSVVREEQLCLFGYYNWSTTSEDLNVWVTTSLGS 279
Query: 234 GLTWSKLTMI 243
++WSK I
Sbjct: 280 VVSWSKFLTI 289
>AT3G20690.1 | Symbols: | F-box protein-related |
chr3:7231570-7232682 REVERSE
Length = 370
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 24/198 (12%)
Query: 102 SNYRRCDSFGLGYDDTSNDYRVVRILQEMQREVWIYSLRSNSW--RKLDVWCELSQGDMG 159
+N+ D GYD + ++++R+ + IY+LRSNS + +++ G
Sbjct: 145 NNFASFDKLAFGYDKSCGCHKILRVFDSYPNRLEIYNLRSNSRMVSSFPLKWDIAFMQDG 204
Query: 160 VFVNGVLYFHGKNLET----IVAFDIATETFC-TIPLPECYIPQGFRHTRGLCVLEGKLC 214
V + G Y++ K+ + ++ FD E F +PLP+ +I + V E KL
Sbjct: 205 VSLKGNTYWYAKDRRSEDCYLICFDFTRERFGPRLPLPQPFIDEFLGSL--YVVREEKLA 262
Query: 215 CCXY----GENGVDIYVGDQHE-DGLTWSKLTMITYKYNFLVTPVFYSGEGDKILYIEEN 269
G++ +DI+V ++ E D ++WSK + TP F+ EG Y+ +
Sbjct: 263 VLVKRWRGGKSEIDIWVTNKIEPDEVSWSKFLKVDN------TPRFFLTEG----YLIYD 312
Query: 270 NEVVWYDFNRETHERFQT 287
E V FN+E E ++
Sbjct: 313 EEKVVVFFNKEETEGLKS 330
>AT3G17540.1 | Symbols: | F-box family protein |
chr3:6002783-6003973 FORWARD
Length = 396
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 71 NTLKTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVRILQ-- 128
+T + +L +WNP T + + + S YR DS+ LGY ++ + Y +IL+
Sbjct: 114 STKENTRLVVWNPCTGQTRWIKP-------SKRYRSDDSYCLGYVNSKSSYHNYKILRYC 166
Query: 129 -------EMQREVWIYSLRSNSWRKLDVWCELSQGDM--GVFVNGVLYFHGKNLET---I 176
E IY S SWR LD +C G G+ + G YF ET +
Sbjct: 167 FYYNDQDACVSEFEIYDFSSESWRVLDDYCTREWGLFCHGMSLKGNTYFVAGEKETGFFM 226
Query: 177 VAFDIATETFCTIPLP 192
+ FD TE F +PLP
Sbjct: 227 LYFDFKTERFERLPLP 242
>AT3G22650.1 | Symbols: ATSFL61, SFL61, CEG | CEG (CEGENDUO) |
chr3:8014809-8015960 FORWARD
Length = 372
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 50/221 (22%)
Query: 74 KTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSND-YRVVRILQ-EMQ 131
++ KL +WNPF R K + +P +SSN D +G GYD+ D Y+++RI E++
Sbjct: 111 RSYKLAVWNPFLSRVKWI-EPMD--FYSSN----DFYGFGYDNVCRDEYKLLRIFDGEIE 163
Query: 132 RE----------VWIYSLRSNSWRKLDVWCELSQGDMGVFVNGVLYF--HGKNLETIV-- 177
E + IY +S+SWR +D D V V G +Y+ H N I
Sbjct: 164 DESEIAGSYEPKIQIYDFKSDSWRIVD--------DTRVSVKGNMYWIAHWNNRPEIFIQ 215
Query: 178 AFDIATETF---CTIPLPECYIPQGFRHTRGLCVLEGKLCCCXY--GEN-GVDIYVGDQH 231
+FD +TETF C +P EC + T L L G + GE +++++ ++
Sbjct: 216 SFDFSTETFKIVCNLPF-ECNV----LDTAALSSLRGDRLSLLHQSGETMKIEVWITNKL 270
Query: 232 EDG-LTWSKLTMIT-------YKYNFLVTPVFYSGEGDKIL 264
D ++W+K +T + L P ++ + D I+
Sbjct: 271 SDEVVSWTKYVDVTSPDLPTLHTDQHLTHPSYFIDKNDNIM 311
>AT3G21410.1 | Symbols: | F-box family protein (FBW1) |
chr3:7536719-7537951 REVERSE
Length = 410
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 46/231 (19%)
Query: 73 LKTVKLGLWNPFTK--RYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSND-YRVVRILQE 129
+T + +WNP R+ L +P+ +R C +G+GYD S D Y+++R +
Sbjct: 132 FETGSMAVWNPCLNQVRWIFLLNPS--------FRGCSCYGIGYDGLSRDSYKILRFVNG 183
Query: 130 M------------QREVWIYSLRSNSWRKLDVWCE--LSQGDMGVFVNGVLYFHGK-NLE 174
+ + EV IY L+SNSW+ V + + G+ + G +Y+ K N +
Sbjct: 184 VFTKNEYANTGSYKPEVDIYELKSNSWKTFKVSLDWHVVLRCKGLSLKGNMYWIAKWNRK 243
Query: 175 T---IVAFDIATETFCTIPLPECYIPQGF--RHTRGLCVLEGKLCCCXYGE---NGVDIY 226
I +F+ +TETF P C +P + + L +G + + +D++
Sbjct: 244 PDIFIQSFNFSTETF----EPLCSLPVRYDVHNVVALSAFKGDNLSLLHQSKETSKIDVW 299
Query: 227 VGDQHEDGLT--WSKLTMITYKYNFLVTPVFYSGEGDK--ILYIEENNEVV 273
V ++ ++G++ W+KL +T PV + E + +I++NN +V
Sbjct: 300 VTNKVKNGVSILWTKLFSVTRPD----LPVLLAFENLSYPVHFIDKNNRIV 346
>AT1G25055.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cyclin-like
F-box (InterPro:IPR001810), F-box associated
(InterPro:IPR006527), F-box associated type 1
(InterPro:IPR017451); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G25211.1); Has 745
Blast hits to 722 proteins in 30 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr1:8806649-8807950 FORWARD
Length = 433
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 53/240 (22%)
Query: 77 KLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVRILQEMQREVW- 135
++ +WNP+ + + + S I DS+ LGYD N ++++R++Q V+
Sbjct: 134 RVVVWNPYLGQTRWIRPRTESNIG-------DSYALGYDINRN-HKILRMVQTRNVSVYR 185
Query: 136 --IYSLRSNSWRKLDVWCELSQGDM-------GVFVNGVLYFHGK--------------- 171
IY LRSNSWR L+V G+M GV V G YF
Sbjct: 186 YEIYDLRSNSWRVLEV---TPNGEMDPNHPLYGVSVKGNTYFFAHEDSSSGEIDEDGDII 242
Query: 172 NLET-IVAFDIATETF-CTIPLPECYIPQGFRHTRGL-CVLEGKLCCCXYGE-------- 220
+LE ++ FD TETF +PLP T L CV + +L + E
Sbjct: 243 DLEDFLLCFDFTTETFGLRLPLP---FHSTIDATVTLSCVRDQQLAVLYHNEGLHSDDRF 299
Query: 221 NGVDIYVGDQHE-DGLTWSKLTMITYKYNFLVTPVFYSGEGDKILYIEENNEV-VWYDFN 278
V+ +V E + ++WSK + + +T V + + +I+E+ +V V +D +
Sbjct: 300 TTVEFWVTTSIEPNSVSWSKFLTVDMR-PLALTGVRFDNDMGATFFIDEDEKVAVVFDLD 358
>AT1G24881.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cyclin-like
F-box (InterPro:IPR001810), F-box associated
(InterPro:IPR006527), F-box associated type 1
(InterPro:IPR017451); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G25211.1); Has 745
Blast hits to 722 proteins in 30 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr1:8784120-8785421 FORWARD
Length = 433
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 53/240 (22%)
Query: 77 KLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVRILQEMQREVW- 135
++ +WNP+ + + + S I DS+ LGYD N ++++R++Q V+
Sbjct: 134 RVVVWNPYLGQTRWIRPRTESNIG-------DSYALGYDINRN-HKILRMVQTRNVSVYR 185
Query: 136 --IYSLRSNSWRKLDVWCELSQGDM-------GVFVNGVLYFHGK--------------- 171
IY LRSNSWR L+V G+M GV V G YF
Sbjct: 186 YEIYDLRSNSWRVLEV---TPNGEMDPNHPLYGVSVKGNTYFFAHEDSSSGEIDEDGDII 242
Query: 172 NLET-IVAFDIATETF-CTIPLPECYIPQGFRHTRGL-CVLEGKLCCCXYGE-------- 220
+LE ++ FD TETF +PLP T L CV + +L + E
Sbjct: 243 DLEDFLLCFDFTTETFGLRLPLP---FHSTIDATVTLSCVRDQQLAVLYHNEGLHSDDRF 299
Query: 221 NGVDIYVGDQHE-DGLTWSKLTMITYKYNFLVTPVFYSGEGDKILYIEENNEV-VWYDFN 278
V+ +V E + ++WSK + + +T V + + +I+E+ +V V +D +
Sbjct: 300 TTVEFWVTTSIEPNSVSWSKFLTVDMR-PLALTGVRFDNDMGATFFIDEDEKVAVVFDLD 358
>AT1G25211.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cyclin-like
F-box (InterPro:IPR001810), F-box associated
(InterPro:IPR006527), F-box associated type 1
(InterPro:IPR017451); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G25055.1); Has 745
Blast hits to 722 proteins in 30 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr1:8835405-8836706 FORWARD
Length = 433
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 53/240 (22%)
Query: 77 KLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVRILQEMQREVW- 135
++ +WNP+ + + + S I DS+ LGYD N ++++R++Q V+
Sbjct: 134 RVVVWNPYLGQTRWIRPRTESNIG-------DSYALGYDINRN-HKILRMVQTRNVSVYR 185
Query: 136 --IYSLRSNSWRKLDVWCELSQGDM-------GVFVNGVLYFHGK--------------- 171
IY LRSNSWR L+V G+M GV V G YF
Sbjct: 186 YEIYDLRSNSWRVLEV---TPNGEMDPNHPLYGVSVKGNTYFFAHEDSSSGEIDEDGDII 242
Query: 172 NLET-IVAFDIATETF-CTIPLPECYIPQGFRHTRGL-CVLEGKLCCCXYGE-------- 220
+LE ++ FD TETF +PLP T L CV + +L + E
Sbjct: 243 DLEDFLLCFDFTTETFGLRLPLP---FHSTIDATVTLSCVRDQQLAVLYHNEGLHSDDRF 299
Query: 221 NGVDIYVGDQHE-DGLTWSKLTMITYKYNFLVTPVFYSGEGDKILYIEENNEV-VWYDFN 278
V+ +V E + ++WSK + + +T V + + +I+E+ +V V +D +
Sbjct: 300 TTVEFWVTTSIEPNSVSWSKFLTVDMR-PLALTGVRFDNDMGATFFIDEDEKVAVVFDLD 358
>AT1G24800.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cyclin-like
F-box (InterPro:IPR001810), F-box associated
(InterPro:IPR006527), F-box associated type 1
(InterPro:IPR017451); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G25211.1); Has 745
Blast hits to 722 proteins in 30 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr1:8769741-8771042 FORWARD
Length = 433
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 53/240 (22%)
Query: 77 KLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVRILQEMQREVW- 135
++ +WNP+ + + + S I DS+ LGYD N ++++R++Q V+
Sbjct: 134 RVVVWNPYLGQTRWIRPRTESNIG-------DSYALGYDINRN-HKILRMVQTRNVSVYR 185
Query: 136 --IYSLRSNSWRKLDVWCELSQGDM-------GVFVNGVLYFHGK--------------- 171
IY LRSNSWR L+V G+M GV V G YF
Sbjct: 186 YEIYDLRSNSWRVLEV---TPNGEMDPNHPLYGVSVKGNTYFFAHEDSSSGEIDEDGDII 242
Query: 172 NLET-IVAFDIATETF-CTIPLPECYIPQGFRHTRGL-CVLEGKLCCCXYGE-------- 220
+LE ++ FD TETF +PLP T L CV + +L + E
Sbjct: 243 DLEDFLLCFDFTTETFGLRLPLP---FHSTIDATVTLSCVRDQQLAVLYHNEGLHSDDRF 299
Query: 221 NGVDIYVGDQHE-DGLTWSKLTMITYKYNFLVTPVFYSGEGDKILYIEENNEV-VWYDFN 278
V+ +V E + ++WSK + + +T V + + +I+E+ +V V +D +
Sbjct: 300 TTVEFWVTTSIEPNSVSWSKFLTVDMR-PLALTGVRFDNDMGATFFIDEDEKVAVVFDLD 358
>AT3G21120.1 | Symbols: | F-box family protein |
chr3:7406326-7407429 FORWARD
Length = 367
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 32/190 (16%)
Query: 74 KTVKLGLWNPFTKRYKILTDPAVSIIWSSNYRRCDSFGLGYDDTSNDYRVVR---ILQEM 130
K +L +WNP + K + ++Y+ D + LGYD+ S+ Y+++R +
Sbjct: 117 KDRRLVVWNPCSGETKWIQP-------RNSYKESDLYALGYDNRSSSYKILRMHPVGNPF 169
Query: 131 QREVWIYSLRSNSWRKLDVWCEL---SQGDMGVFVNGVLYFHG--------KNLETIVAF 179
E +Y S+SWR + V + + G+ V G Y+ + +++F
Sbjct: 170 HIESEVYDFASHSWRSVGVTTDFHIQTNESYGMNVKGTTYWFALSKDWWSSDDRRFLLSF 229
Query: 180 DIATETFCTIPLPECYIPQGFRHTRGLCVLEGKLCCCXYGENG------VDIYVGDQHED 233
D + E F +PLP + T L V + C + G +D++V + E+
Sbjct: 230 DFSRERFQCLPLPADV--KNLHLTVVLSVTREEQQLCMFATLGAGNVYKLDVFVATKTEE 287
Query: 234 G---LTWSKL 240
LTW+K
Sbjct: 288 TTGELTWTKF 297