Jatropha Genome Database

JcCA0252151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0252151.10 - phase: 1 /partial
         (91 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71990.1 | Symbols: FUT13, ATFUT13, FUCTC, FT4-M | FUT13 (FUC...   117   2e-27

>AT1G71990.1 | Symbols: FUT13, ATFUT13, FUCTC, FT4-M | FUT13
           (FUCOSYLTRANSFERASE 13); fucosyltransferase/
           transferase, transferring glycosyl groups |
           chr1:27100345-27102097 FORWARD
          Length = 401

 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/79 (73%), Positives = 62/79 (78%), Gaps = 6/79 (7%)

Query: 7   GSNRSASLQVVGGDSDCSDLKMGHVSVLVKGWTWIPDNLDNLYSCRCGLTCLWTKSAVLA 66
           G+  S SLQ  G    C  LKM HV VLVKGWTWIPDNL+NLYSCRCG+TCLWTKS+VLA
Sbjct: 84  GNVSSGSLQEFG----CGKLKMKHVKVLVKGWTWIPDNLENLYSCRCGMTCLWTKSSVLA 139

Query: 67  DKPDTLLFETTTPP--RRV 83
           D PD LLFETTTPP  RRV
Sbjct: 140 DSPDALLFETTTPPLQRRV 158