Jatropha Genome Database
- JcCA0251901.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0251901.10 + phase: 0
(387 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12120.2 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2); de... 565 e-161
AT3G12120.1 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2); de... 565 e-161
AT2G29980.1 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3); om... 202 3e-52
AT3G11170.1 | Symbols: FAD7, FADD | FAD7 (FATTY ACID DESATURASE ... 197 6e-51
AT5G05580.1 | Symbols: FAD8 | FAD8 (FATTY ACID DESATURASE 8); om... 189 3e-48
AT2G29980.2 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3); om... 133 2e-31
AT4G30950.1 | Symbols: FAD6, FADC, SFD4 | FAD6 (FATTY ACID DESAT... 90 3e-18
>AT3G12120.2 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2);
delta12-fatty acid dehydrogenase/ omega-6 fatty acid
desaturase | chr3:3860592-3861743 REVERSE
Length = 383
Score = 565 bits (1455), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/386 (69%), Positives = 308/386 (79%), Gaps = 4/386 (1%)
Query: 1 MGAGGQKTAVLVSSKFKEMETNRRLKRVPHTKPPFTLGQIKQAIPSHCFKRSLLRXXXXX 60
MGAGG + V SSK E +T KRVP KPPF++G +K+AIP HCFKRS+ R
Sbjct: 1 MGAGG-RMPVPTSSKKSETDTT---KRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYL 56
Query: 61 XXXXXXXXXXXXIAASYFHLLPSPISYIAWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQ 120
+A +YF LLP P+SY+AWP+YW QGC LTG+WVIAHECGHHAFSDYQ
Sbjct: 57 ISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQ 116
Query: 121 WVDDTVGLILHSSLLVPYFSWKISHRRHHSNTGSIERDEVFVPKFKSRIPWYSQYLNNPL 180
W+DDTVGLI HS LLVPYFSWK SHRRHHSNTGS+ERDEVFVPK KS I WY +YLNNPL
Sbjct: 117 WLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPL 176
Query: 181 GRXXXXXXXXXVGWPLYLAFNVSGRPYNRFACHFDPSGPIYSDRERLQIYISDIGIFAAT 240
GR +GWPLYLAFNVSGRPY+ FACHF P+ PIY+DRERLQIY+SD GI A
Sbjct: 177 GRIMMLTVQFVLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVC 236
Query: 241 YVLYQIAMAKGLAWLISIYGIPLLIVNAFLVTITYLQHTHPALPHYDSSEWDWLRGALST 300
+ LY+ A A+G+A +I +YG+PLLIVNAFLV ITYLQHTHP+LPHYDSSEWDWLRGAL+T
Sbjct: 237 FGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALAT 296
Query: 301 VDRDYGVLNKVFHNITDTHVTHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPILMALW 360
VDRDYG+LNKVFHNITDTHV HHLFSTMPHY+AMEATKAIKPILG+YYQFDGTP +A++
Sbjct: 297 VDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMY 356
Query: 361 REAKECLFVEPEEGGPNRGVLWYGNK 386
REAKEC++VEP+ G +GV WY NK
Sbjct: 357 REAKECIYVEPDREGDKKGVYWYNNK 382
>AT3G12120.1 | Symbols: FAD2 | FAD2 (FATTY ACID DESATURASE 2);
delta12-fatty acid dehydrogenase/ omega-6 fatty acid
desaturase | chr3:3860592-3861743 REVERSE
Length = 383
Score = 565 bits (1455), Expect = e-161, Method: Compositional matrix adjust.
Identities = 268/386 (69%), Positives = 308/386 (79%), Gaps = 4/386 (1%)
Query: 1 MGAGGQKTAVLVSSKFKEMETNRRLKRVPHTKPPFTLGQIKQAIPSHCFKRSLLRXXXXX 60
MGAGG + V SSK E +T KRVP KPPF++G +K+AIP HCFKRS+ R
Sbjct: 1 MGAGG-RMPVPTSSKKSETDTT---KRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYL 56
Query: 61 XXXXXXXXXXXXIAASYFHLLPSPISYIAWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQ 120
+A +YF LLP P+SY+AWP+YW QGC LTG+WVIAHECGHHAFSDYQ
Sbjct: 57 ISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQ 116
Query: 121 WVDDTVGLILHSSLLVPYFSWKISHRRHHSNTGSIERDEVFVPKFKSRIPWYSQYLNNPL 180
W+DDTVGLI HS LLVPYFSWK SHRRHHSNTGS+ERDEVFVPK KS I WY +YLNNPL
Sbjct: 117 WLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPL 176
Query: 181 GRXXXXXXXXXVGWPLYLAFNVSGRPYNRFACHFDPSGPIYSDRERLQIYISDIGIFAAT 240
GR +GWPLYLAFNVSGRPY+ FACHF P+ PIY+DRERLQIY+SD GI A
Sbjct: 177 GRIMMLTVQFVLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVC 236
Query: 241 YVLYQIAMAKGLAWLISIYGIPLLIVNAFLVTITYLQHTHPALPHYDSSEWDWLRGALST 300
+ LY+ A A+G+A +I +YG+PLLIVNAFLV ITYLQHTHP+LPHYDSSEWDWLRGAL+T
Sbjct: 237 FGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALAT 296
Query: 301 VDRDYGVLNKVFHNITDTHVTHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPILMALW 360
VDRDYG+LNKVFHNITDTHV HHLFSTMPHY+AMEATKAIKPILG+YYQFDGTP +A++
Sbjct: 297 VDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMY 356
Query: 361 REAKECLFVEPEEGGPNRGVLWYGNK 386
REAKEC++VEP+ G +GV WY NK
Sbjct: 357 REAKECIYVEPDREGDKKGVYWYNNK 382
>AT2G29980.1 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3);
omega-3 fatty acid desaturase | chr2:12781787-12784946
REVERSE
Length = 386
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/352 (34%), Positives = 176/352 (50%), Gaps = 26/352 (7%)
Query: 3 AGGQKTAVLVSSKFKEMETNRRLKRVPHTKPPFTLGQIKQAIPSHCFKRSLLRXXXXXXX 62
A Q+T V + + R P +PPF +G I+ AIP HC+ +S LR
Sbjct: 4 AMDQRTNVNGDPGAGDRKKEERFD--PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVR 61
Query: 63 XXXXXXXXXXIAASYFHLLPSPISYIAWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQWV 122
A S+ WP+YW QG ++V+ H+CGH +FSD +
Sbjct: 62 DIIAVAALAIAAVYV-------DSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLL 114
Query: 123 DDTVGLILHSSLLVPYFSWKISHRRHHSNTGSIERDEVFVP---KFKSRIPWYSQYLNNP 179
+ VG ILHS +LVPY W+ISHR HH N G +E DE +VP + ++P ++ L
Sbjct: 115 NSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLR-- 172
Query: 180 LGRXXXXXXXXXVGWPLYLAFNVSGRPYNRFACHFDPSGPIYSDRERLQIYISDIGIFAA 239
+ +PLYL + G+ HF+P +++ ER I S
Sbjct: 173 -----YTVPLPMLAYPLYLCYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIM 223
Query: 240 TYVLYQIAMAKGLAWLISIYGIPLLIVNAFLVTITYLQH--THPALPHYDSSEWDWLRGA 297
L ++ G ++ +YG+P +I +L +TYL H LP Y EW +LRG
Sbjct: 224 FVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGG 283
Query: 298 LSTVDRDYGVLNKVFHNITDTHVTHHLFSTMPHYHAMEATKAIKPILGEYYQ 349
L+T+DRDYG+ N + H+I THV HHLF +PHYH ++ATKA K +LG YY+
Sbjct: 284 LTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYR 334
>AT3G11170.1 | Symbols: FAD7, FADD | FAD7 (FATTY ACID DESATURASE 7);
omega-3 fatty acid desaturase | chr3:3499959-3502126
FORWARD
Length = 446
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/343 (34%), Positives = 176/343 (51%), Gaps = 20/343 (5%)
Query: 11 LVSSKFKE--METNRRLKRVPHTKPPFTLGQIKQAIPSHCFKRSLLRXXXXXXXXXXXXX 68
L + F+E +E + + + P PPF L I+ AIP HC+ ++ +
Sbjct: 70 LTTPIFEESPLEEDNKQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVF 129
Query: 69 XXXXIAASYFHLLPSPISYIAWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQWVDDTVGL 128
A+Y + ++I WP+YW QG ++V+ H+CGH +FS+ ++ VG
Sbjct: 130 ALAA-GAAYLN------NWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGH 182
Query: 129 ILHSSLLVPYFSWKISHRRHHSNTGSIERDEVFVPKFKSRIPWYSQYLNNPLGRXXXXXX 188
+LHSS+LVPY W+ISHR HH N G +E DE + P + L+ P
Sbjct: 183 LLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEK----IYNTLDKPTRFFRFTLP 238
Query: 189 XXXVGWPLYLAFNVSGRPYNRFACHFDPSGPIYSDRERLQIYISDIGIFAATYVLYQIAM 248
+ +P YL G+ H+ P ++ +ER + S A +L +
Sbjct: 239 LVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERKDVLTSTACWTAMAALLVCLNF 294
Query: 249 AKGLAWLISIYGIPLLIVNAFLVTITYLQH--THPALPHYDSSEWDWLRGALSTVDRDYG 306
G ++ +YGIP I +L +TYL H LP Y EW +LRG L+T+DRDYG
Sbjct: 295 TIGPIQMLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYG 354
Query: 307 VLNKVFHNITDTHVTHHLFSTMPHYHAMEATKAIKPILGEYYQ 349
++N + H+I THV HHLF +PHYH +EAT+A KP+LG+YY+
Sbjct: 355 LINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396
>AT5G05580.1 | Symbols: FAD8 | FAD8 (FATTY ACID DESATURASE 8);
omega-3 fatty acid desaturase | chr5:1664331-1666345
FORWARD
Length = 435
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 165/323 (51%), Gaps = 18/323 (5%)
Query: 29 PHTKPPFTLGQIKQAIPSHCFKRSLLRXXXXXXXXXXXXXXXXXIAASYFHLLPSPISYI 88
P PPF L I+ AIP HC+ ++ +AA YF+ +++
Sbjct: 83 PGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAA-YFN------NWL 135
Query: 89 AWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSSLLVPYFSWKISHRRH 148
WP+YW QG ++V+ H+CGH +FS+ ++ G +LHSS+LVPY W+ISHR H
Sbjct: 136 LWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTH 195
Query: 149 HSNTGSIERDEVFVPKFKSRIPWYSQYLNNPLGRXXXXXXXXXVGWPLYLAFNVSGRPYN 208
H N G +E DE + P +S + L + +P YL G+
Sbjct: 196 HQNHGHVENDESWHPLPES----IYKNLEKTTQMFRFTLPFPMLAYPFYLWNRSPGKQ-- 249
Query: 209 RFACHFDPSGPIYSDRERLQIYISDIGIFAATYVLYQIAMAKGLAWLISIYGIPLLIVNA 268
H+ P ++ +E+ + S A +L + G ++ +YGIP I
Sbjct: 250 --GSHYHPDSDLFLPKEKKDVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPYWIFVM 307
Query: 269 FLVTITYLQH--THPALPHYDSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVTHHLFS 326
+L +TYL H LP Y EW +LRG L+T+DRDYG +N + H+I THV HHLF
Sbjct: 308 WLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFP 366
Query: 327 TMPHYHAMEATKAIKPILGEYYQ 349
+PHYH +EAT+A KP+LG+YY+
Sbjct: 367 QIPHYHLVEATEAAKPVLGKYYR 389
>AT2G29980.2 | Symbols: FAD3 | FAD3 (FATTY ACID DESATURASE 3);
omega-3 fatty acid desaturase | chr2:12782257-12784946
REVERSE
Length = 288
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 135/302 (44%), Gaps = 29/302 (9%)
Query: 3 AGGQKTAVLVSSKFKEMETNRRLKRVPHTKPPFTLGQIKQAIPSHCFKRSLLRXXXXXXX 62
A Q+T V + + R P +PPF +G I+ AIP HC+ +S LR
Sbjct: 4 AMDQRTNVNGDPGAGDRKKEERFD--PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVR 61
Query: 63 XXXXXXXXXXIAASYFHLLPSPISYIAWPIYWTLQGCTLTGVWVIAHECGHHAFSDYQWV 122
A S+ WP+YW QG ++V+ H+CGH +FSD +
Sbjct: 62 DIIAVAALAIAAVYV-------DSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLL 114
Query: 123 DDTVGLILHSSLLVPYFSWKISHRRHHSNTGSIERDEVFVP---KFKSRIPWYSQYLNNP 179
+ VG ILHS +LVPY W+ISHR HH N G +E DE +VP + ++P ++ L
Sbjct: 115 NSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLR-- 172
Query: 180 LGRXXXXXXXXXVGWPLYLAFNVSGRPYNRFACHFDPSGPIYSDRERLQIYISDIGIFAA 239
+ +PLYL + G+ HF+P +++ ER I S
Sbjct: 173 -----YTVPLPMLAYPLYLCYRSPGKE----GSHFNPYSSLFAPSERKLIATSTTCWSIM 223
Query: 240 TYVLYQIAMAKGLAWLISIYGIPLLIVNAFLVTITYLQHTHPALPHYDSSEWDWLRGALS 299
L ++ G ++ +YG+P +I +L +TYL H H + W RG +S
Sbjct: 224 FVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHH------HGHDEKLPWYRGKVS 277
Query: 300 TV 301
+
Sbjct: 278 KI 279
>AT4G30950.1 | Symbols: FAD6, FADC, SFD4 | FAD6 (FATTY ACID
DESATURASE 6); omega-6 fatty acid desaturase |
chr4:15057278-15059673 REVERSE
Length = 448
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 125/261 (47%), Gaps = 22/261 (8%)
Query: 91 PIYWTLQGCTLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSSLLVPYFSWKISHRRHHS 150
P+ W G +TG +VI H+C H +FS + V+D VG + L+ PY W+ H RHH+
Sbjct: 153 PLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHA 212
Query: 151 NTGSIERDEVFVPKFKSRIPWYSQYLNNPLGRXXXXXXXXXVGWPLYLAFNVSGRPYNRF 210
T + D + P +P ++ ++P+ R + L +A V+
Sbjct: 213 KTNMLVHDTAWQP-----VP-PEEFESSPVMRKAIIFGYGPIRPWLSIAHWVNW------ 260
Query: 211 ACHFDPSGPIYSDRERLQIYISDIGIFAAT---YVLYQIAMAKGLAWLISIYGIPLLIVN 267
HF+ S+ R++I ++ + F A ++Y++ + L W + + +P L +
Sbjct: 261 --HFNLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGI---LGW-VKFWLMPWLGYH 314
Query: 268 AFLVTITYLQHTHPALPHYDSSEWDWLRGALS-TVDRDYGVLNKVFHNITDTHVTHHLFS 326
++ T T + HT P +P + EW+ + L+ TV DY ++ + + H+ HH+
Sbjct: 315 FWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISP 374
Query: 327 TMPHYHAMEATKAIKPILGEY 347
+P Y+ A ++I+ G+Y
Sbjct: 375 RIPSYNLRAAHESIQENWGKY 395