Jatropha Genome Database

JcCA0251661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0251661.10 - phase: 1 /partial
         (179 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72390.1 | Symbols:  | unknown protein | chr1:27245455-272512...   182   7e-47

>AT1G72390.1 | Symbols:  | unknown protein | chr1:27245455-27251218
           FORWARD
          Length = 1325

 Score =  182 bits (463), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 125/177 (70%), Gaps = 3/177 (1%)

Query: 3   PQTPVMSGVGSPASVSNISVPLNANSPSVGTPPMADQTMLERLSKIEMVTIRHQLNSKKN 62
           P+T V+S VGSP SV+ ISVP+NA SPSVG   + D  +L+R SKIE V  R+QLN KK+
Sbjct: 616 PKTQVISTVGSPVSVNTISVPVNARSPSVGPQTLGDHAILDRFSKIERVAARYQLNCKKH 675

Query: 63  KVDDFPVRKPNTYSHQNVMACLSNLPNNEDLKDDASARQLFKSVVGGSMNVLKIRIINFL 122
           KVD++  R+P  Y+ Q +  CLSNL N E  KD+  A  L KS+ GGSMN  K R+I+F 
Sbjct: 676 KVDEY-SRRPRVYAKQPLTVCLSNLSNEEVFKDEDEA--LSKSIFGGSMNTYKTRVIHFG 732

Query: 123 LADRVIQGNAVSFVPRSRTRMILSEKPNDGTVAMHYGEPEDGDPLSVEDYLPSLPNT 179
             +RV+QG+  SF+PR+RTR+++SEK  DGTVA + G+ ++GD    ED+L +LPNT
Sbjct: 733 QMERVMQGSVPSFIPRNRTRLVMSEKAVDGTVAWYQGDVDEGDVFQAEDFLLALPNT 789