Jatropha Genome Database

JcCA0250521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0250521.10 + phase: 0 
         (119 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25980.1 | Symbols:  | mitotic spindle checkpoint protein, pu...   231   6e-62

>AT3G25980.1 | Symbols:  | mitotic spindle checkpoint protein,
           putative (MAD2) | chr3:9503232-9504402 FORWARD
          Length = 209

 Score =  231 bits (589), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 108/119 (90%), Positives = 113/119 (94%)

Query: 1   MSKVTNEVLERWNFSIETDSEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEA 60
           MSK T EVLERWNF IETD+EVV+KGVSREKSDKEIMREIQAIMRQ+ASS+TYLPCLDE 
Sbjct: 90  MSKATGEVLERWNFRIETDNEVVDKGVSREKSDKEIMREIQAIMRQVASSVTYLPCLDET 149

Query: 61  CVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ 119
           CVFDVLAYTD DVAVPFTWIESDPKLIANPQMVKLH FDTKIHKVDTLVSYKNDEWDE+
Sbjct: 150 CVFDVLAYTDTDVAVPFTWIESDPKLIANPQMVKLHGFDTKIHKVDTLVSYKNDEWDEE 208