Jatropha Genome Database

JcCA0249491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0249491.10 - phase: 1 /pseudo/partial
         (435 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G55090.1 | Symbols:  | carbon-nitrogen hydrolase family prote...   504   e-143

>AT1G55090.1 | Symbols:  | carbon-nitrogen hydrolase family protein
           | chr1:20554857-20558188 FORWARD
          Length = 725

 Score =  504 bits (1297), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 255/419 (60%), Positives = 298/419 (71%), Gaps = 12/419 (2%)

Query: 24  RQLVSVFRALIGVTRSLGGVYMYSNHRGCDGGRLYYDGCSCVVVNGEVVALGSQFSLKXX 83
           R+L     A +G T + GGVYMYSN +GCDG RLYYDGC+C+VVNG VVA GSQFSL+  
Sbjct: 206 RKLDIRLNAFMGATHARGGVYMYSNQQGCDGSRLYYDGCACIVVNGNVVAQGSQFSLRDV 265

Query: 84  XXXXXXXXXXXXXXKRGSSSSFLEEPSGKTRIPSLAVPYKLCQTFNLKMPISNPIKMTPC 143
                          RGS SSF E+ S K ++ S+AVP +L Q+FNLKM +S+P K+   
Sbjct: 266 EVIISQVDLDAVASLRGSISSFQEQASCKVKVSSVAVPCRLTQSFNLKMTLSSPKKIIYH 325

Query: 144 SPEEEIASGPACWLWDYLRRSEASGFLLPLSGAVNSSAVAAIVGSMCQLVVKEIANGDEQ 203
           SP+EEIA GPACW+WDYLRRS ASGFLLPLSG  +SS+VAAIVG MCQLVVKEIA GDEQ
Sbjct: 326 SPQEEIAFGPACWMWDYLRRSGASGFLLPLSGGADSSSVAAIVGCMCQLVVKEIAKGDEQ 385

Query: 204 VKADAIRIGCYTDEQFPTDSKEFAKRIFYTVFMESENSSEAMKQQAKAMADDIGSRHXXX 263
           VKADA RIG Y + QFPTDSKEFAKRIFYTVFM SENSSE  K+++K +AD+IG+ H   
Sbjct: 386 VKADANRIGNYANGQFPTDSKEFAKRIFYTVFMGSENSSEETKRRSKQLADEIGAWHLDV 445

Query: 264 XXXXXXXXXXXXFQTVTGKKPRNKVDGGSDAENRGLKNIQARTRMTLASTLASLLPWVHN 323
                       FQTVTGK+PR KVDGGS+AEN GL+NIQAR RM LA  LASLLPWVH+
Sbjct: 446 CIDGVVSAVLSLFQTVTGKRPRYKVDGGSNAENLGLQNIQARMRMVLAFMLASLLPWVHS 505

Query: 324 KSGXXXXXXXXXXDEQLSGQLTKYGCSSGDINPIGSFNKKDIQAFLRWAATNLGYSSLAK 383
           K G          DE L G LTKY CSS DINPIGS +K D++ FL+WAATNLGY SLA+
Sbjct: 506 KPGFYLVLGSSNVDEGLRGYLTKYDCSSADINPIGSISKMDLRLFLKWAATNLGYPSLAE 565

Query: 384 VEAAS------------QNLDAKEIVMTSEELSVLGKWRKTFRCGPVSMFQNLCHKWGS 430
           +EAA               LD  ++ MT EELSV G+ RK FRCGPVSMF+NLC+KWG+
Sbjct: 566 IEAAPPTAELEPIRSDYSQLDEVDMGMTYEELSVYGRMRKIFRCGPVSMFKNLCYKWGT 624