Jatropha Genome Database

JcCA0247191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0247191.10 + phase: 1 /partial
         (136 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22200.1 | Symbols: POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL ...   235   6e-63

>AT3G22200.1 | Symbols: POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL
           INCOMPATIBILITY 2); 4-aminobutyrate transaminase/
           4-aminobutyrate:pyruvate transaminase |
           chr3:7835286-7838863 FORWARD
          Length = 504

 Score =  235 bits (600), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 109/118 (92%), Positives = 113/118 (95%)

Query: 19  VKLVWYYNNALGRPNKKKFIARAKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPH 78
           VKLVWYYNNALGRP KKKFIAR KSYHGSTLISASLSGLP LHQ FDLPAPFVLHTDCPH
Sbjct: 166 VKLVWYYNNALGRPEKKKFIARKKSYHGSTLISASLSGLPPLHQNFDLPAPFVLHTDCPH 225

Query: 79  YWRYHLPGETEEEFSSRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPASYFEK 136
           YWR+HLPGETEEEFS+RLAKNLEDLI+KEGPETI AFIAEPVMGAGGVIPPPA+YFEK
Sbjct: 226 YWRFHLPGETEEEFSTRLAKNLEDLIIKEGPETIGAFIAEPVMGAGGVIPPPATYFEK 283